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各种粘质沙雷氏菌属种和分离株的 VOC 排放及多粘类芽孢杆菌 4Rx13 的基因组分析。

VOC emission of various Serratia species and isolates and genome analysis of Serratia plymuthica 4Rx13.

机构信息

Institute of Biological Sciences, University of Rostock, Rostock, Germany.

出版信息

FEMS Microbiol Lett. 2014 Mar;352(1):45-53. doi: 10.1111/1574-6968.12359. Epub 2014 Jan 7.

Abstract

Bacteria emit a wealth of volatile organic compounds. Gas chromatography coupled to mass spectrometry analysis of five Serratia strains revealed ketones, dimethyl di- and trisulfide and 2-phenylethanol commonly released in this genus. The polymethylated bicyclic hydrocarbon sodorifen was uniquely released by the rhizobacterium Serratia plymuthica 4Rx13. Of 10 Serratia strains, only S. plymuthica isolates originating from plants grown on fields near Rostock (Germany) released this new and unusual compound. Since the biosynthetic pathway of sodorifen was unknown, the genome sequence of S. plymuthica 4Rx13 was determined and annotated. Genome comparison of S. plymuthica 4Rx13 with sodorifen non-producing Serratia species highlighted 246 unique candidate open reading frames.

摘要

细菌会释放出大量的挥发性有机化合物。对 5 株沙雷氏菌的气相色谱-质谱联用分析显示,该属通常会释放出酮、二甲基二硫醚和 2-苯乙醇。多甲基双环烃 sodorifen 则是由根际细菌沙雷氏菌 plymuthica 4Rx13 特异性释放的。在 10 株沙雷氏菌中,只有源自德国罗斯托克附近田地种植的植物的沙雷氏菌 plymuthica 分离株会释放这种新的、不寻常的化合物。由于 sodorifen 的生物合成途径未知,因此确定并注释了沙雷氏菌 plymuthica 4Rx13 的基因组序列。沙雷氏菌 plymuthica 4Rx13 与非 sodorifen 产生沙雷氏菌种的基因组比较突出了 246 个独特的候选开放阅读框。

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