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HWE 激酶相关应答调节蛋白 Sma0114 在激活状态下的 NMR 结构。

NMR structure of the HWE kinase associated response regulator Sma0114 in its activated state.

机构信息

Department of Molecular and Cellular Biology, University of Connecticut, Storrs , Connecticut, United States.

出版信息

Biochemistry. 2014 Jan 21;53(2):311-22. doi: 10.1021/bi401497h. Epub 2014 Jan 6.

DOI:10.1021/bi401497h
PMID:24364624
Abstract

Bacterial receiver domains modulate intracellular responses to external stimuli in two-component systems. Sma0114 is the first structurally characterized representative from the family of receiver domains that are substrates for histidine-tryptophan-glutamate (HWE) kinases. We report the NMR structure of Sma0114 bound by Ca(2+) and BeF3(-), a phosphate analogue that stabilizes the activated state. Differences between the NMR structures of the inactive and activated states occur in helix α1, the active site loop that connects strand β3 and helix α3, and in the segment from strand β5 to helix α5 of the 455 (α4-β5-α5) face. Structural rearrangements of the 455 face typically make receiver domains competent for binding downstream target molecules. In Sma0114 the structural changes accompanying activation result in a more negatively charged surface for the 455 face. Coupling between the 455 face and active site phosphorylation is usually mediated through the rearrangement of a threonine and tyrosine residue, in a mechanism called Y-T coupling. The NMR structure indicates that Sma0114 lacks Y-T coupling and that communication between the active site and the 455 face is achieved through a conserved lysine residue that stabilizes the acyl phosphate in receiver domains. (15)N-NMR relaxation experiments were used to investigate the backbone dynamics of the Sma0114 apoprotein, the binary Sma0114·Ca(2+) complex, and the ternary Sma0114·Ca(2+)·BeF3(-) complex. The loss of entropy due to ligand binding at the active site is compensated by increased flexibility in the 455 face. The dynamic character of the 455 face in Sma0114, which results in part from the replacement of helix α4 by a flexible loop, may facilitate induced-fit recognition of target molecules.

摘要

细菌受体结构域调节双组分系统中细胞内对外界刺激的反应。Sma0114 是第一个从组氨酸-色氨酸-谷氨酸(HWE)激酶底物的受体结构域家族中得到结构表征的代表。我们报告了 Sma0114 与 Ca(2+)和 BeF3(-)结合的 NMR 结构,BeF3(-)是一种磷酸类似物,可稳定激活状态。在无活性和激活状态的 NMR 结构之间的差异发生在α1 螺旋、连接β3 链和α3 螺旋的活性位点环,以及从β5 链到α5 螺旋的 455(α4-β5-α5)面的片段中。455 面的结构重排通常使受体结构域能够与下游靶分子结合。在 Sma0114 中,激活伴随的结构变化导致 455 面的表面带更多负电荷。455 面和活性位点磷酸化之间的偶联通常通过苏氨酸和酪氨酸残基的重排来介导,这种机制称为 Y-T 偶联。NMR 结构表明 Sma0114 缺乏 Y-T 偶联,并且通过稳定受体结构域中酰基磷酸的保守赖氨酸残基来实现活性位点和 455 面之间的通讯。(15)N-NMR 弛豫实验用于研究 Sma0114 脱蛋白、二元 Sma0114·Ca(2+)复合物和三元 Sma0114·Ca(2+)·BeF3(-)复合物的骨架动力学。由于在活性位点结合配体而导致的熵损失通过 455 面的增加的灵活性得到补偿。Sma0114 中 455 面的动态特性部分归因于由灵活的环取代α4 螺旋,可能有助于靶分子的诱导契合识别。

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