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Protein-ligand interaction studies of retinol-binding protein 3 with herbal molecules using AutoDock for the management of Eales' disease.使用自动对接技术研究视黄醇结合蛋白3与草药分子的蛋白质-配体相互作用,以用于伊尔斯病的治疗。
J Ocul Biol Dis Infor. 2012 Dec 30;5(2):40-3. doi: 10.1007/s12177-012-9098-6. eCollection 2012.
2
Comparative modeling of retinol-binding protein-3 and retinal S-antigen in Eales' disease and prediction of their binding sites using computational methods.伊尔斯病中视黄醇结合蛋白-3和视网膜S抗原的比较建模及利用计算方法预测它们的结合位点
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本文引用的文献

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Comparative modeling of retinol-binding protein-3 and retinal S-antigen in Eales' disease and prediction of their binding sites using computational methods.伊尔斯病中视黄醇结合蛋白-3和视网膜S抗原的比较建模及利用计算方法预测它们的结合位点
J Ocul Biol Dis Infor. 2010 Sep;3(3):88-91. doi: 10.1007/s12177-011-9060-z. Epub 2011 Jul 26.
2
Assessment of gelatinase and tumor necrosis factor-α level in the vitreous and serum of patients with Eales disease: role of inflammation-mediated angiogenesis in the pathogenesis of Eales disease.评估 Eales 病患者玻璃体液和血清中明胶酶和肿瘤坏死因子-α水平:炎症介导的血管生成在 Eales 病发病机制中的作用。
Retina. 2011 Jul-Aug;31(7):1412-20. doi: 10.1097/IAE.0b013e318203c199.
3
Tumor necrosis factor-α-mediated severity of idiopathic retinal periphlebitis in young adults (Eales' disease): implication for anti-TNF-α therapy.肿瘤坏死因子-α介导的年轻成人特发性视网膜静脉周围炎(伊尔斯病)的严重程度:对抗肿瘤坏死因子-α治疗的启示
J Ocul Biol Dis Infor. 2010 Jul 16;3(1):35-8. doi: 10.1007/s12177-010-9053-3.
4
Eales' disease: diagnosis and management.Eales 病:诊断与管理。
Eye (Lond). 2010 Mar;24(3):472-82. doi: 10.1038/eye.2009.315. Epub 2010 Jan 15.
5
From virtuality to reality - Virtual screening in lead discovery and lead optimization: a medicinal chemistry perspective.从虚拟到现实——基于药物化学视角的先导化合物发现与优化中的虚拟筛选
Curr Opin Drug Discov Devel. 2008 Jul;11(4):559-68.
6
Virtual screening for the discovery of bioactive natural products.用于发现生物活性天然产物的虚拟筛选
Prog Drug Res. 2008;65:211, 213-49. doi: 10.1007/978-3-7643-8117-2_6.
7
Association of mycobacteria with Eales' disease.分枝杆菌与伊尔斯病的关联。
Indian J Med Res. 2007 Jul;126(1):56-62.
8
A semiempirical free energy force field with charge-based desolvation.一种基于电荷去溶剂化的半经验自由能力场。
J Comput Chem. 2007 Apr 30;28(6):1145-52. doi: 10.1002/jcc.20634.
9
Q-SiteFinder: an energy-based method for the prediction of protein-ligand binding sites.Q-SiteFinder:一种基于能量的蛋白质-配体结合位点预测方法。
Bioinformatics. 2005 May 1;21(9):1908-16. doi: 10.1093/bioinformatics/bti315. Epub 2005 Feb 8.
10
Protein docking along smooth association pathways.沿着平滑结合途径的蛋白质对接
Proc Natl Acad Sci U S A. 2001 Sep 11;98(19):10636-41. doi: 10.1073/pnas.181147798. Epub 2001 Aug 21.

使用自动对接技术研究视黄醇结合蛋白3与草药分子的蛋白质-配体相互作用,以用于伊尔斯病的治疗。

Protein-ligand interaction studies of retinol-binding protein 3 with herbal molecules using AutoDock for the management of Eales' disease.

作者信息

Tiwari Anshul, Saxena Sandeep, Pant A B, Srivastava Prachi

机构信息

Department of Ophthalmology, King George's Medical University, Lucknow, India ; Amity Institute of Biotechnology, Amity University Uttar Pradesh, Lucknow, India.

Department of Ophthalmology, King George's Medical University, Lucknow, India.

出版信息

J Ocul Biol Dis Infor. 2012 Dec 30;5(2):40-3. doi: 10.1007/s12177-012-9098-6. eCollection 2012.

DOI:10.1007/s12177-012-9098-6
PMID:24376904
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3572241/
Abstract

Eales' disease is an idiopathic retinal vasculitis of the eye. The disease is predominantly characterized by recurrent vitreous hemorrhage. Interphotoreceptor retinol-binding protein 3 plays a significant role in the etiopathogenesis of this condition. It transports retinoids between the retinal pigment epithelium and the photoreceptors; hence, this protein is a potential target for docking studies. In silico data reveal that herbal molecules interact with regulatory domains of interphotoreceptor retinol-binding protein 3 (IRBP-3), resulting into significant docking score and also forms H-bond and several hydrophobic interactions between active residues of IRBP-3. These interactions between the active residues may lead to significant conformational change in that particular portion of the protein. This efficacy and suitability of ligand was determined on the basis of binding energy calculations. Ginkgolide showed minimum binding energy calculations among selected 10 other natural ligands. This fact of virtual screening for potential ligand can give new insights toward the therapeutic intonations and alterations toward the advances in treatment for Eales' disease.

摘要

伊尔斯病是一种眼部特发性视网膜血管炎。该疾病主要特征为反复性玻璃体出血。光感受器间视黄醇结合蛋白3在这种疾病的发病机制中起重要作用。它在视网膜色素上皮和光感受器之间转运视黄醇;因此,这种蛋白质是对接研究的潜在靶点。计算机模拟数据显示,草药分子与光感受器间视黄醇结合蛋白3(IRBP - 3)的调节域相互作用,产生显著的对接分数,并且在IRBP - 3的活性残基之间形成氢键和若干疏水相互作用。这些活性残基之间的相互作用可能导致该蛋白质特定部分发生显著的构象变化。配体的这种功效和适用性是基于结合能计算确定的。在选定的其他10种天然配体中,银杏内酯的结合能计算值最小。这种对潜在配体的虚拟筛选结果可为伊尔斯病治疗的治疗思路和治疗进展的改变提供新的见解。