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本文引用的文献

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Large oligoclonal outbreak due to Klebsiella pneumoniae ST14 and ST26 producing the FOX-7 AmpC β-lactamase in a neonatal intensive care unit.新生儿重症监护病房中由产FOX-7 AmpC β-内酰胺酶的肺炎克雷伯菌ST14和ST26引起的大规模寡克隆暴发。
J Clin Microbiol. 2013 Dec;51(12):4067-72. doi: 10.1128/JCM.01982-13. Epub 2013 Oct 2.
2
Clinical epidemiology of the global expansion of Klebsiella pneumoniae carbapenemases.全球扩展型碳青霉烯酶肺炎克雷伯菌的临床流行病学。
Lancet Infect Dis. 2013 Sep;13(9):785-96. doi: 10.1016/S1473-3099(13)70190-7.
3
Rapid bacterial whole-genome sequencing to enhance diagnostic and public health microbiology.快速的细菌全基因组测序以增强诊断和公共卫生微生物学。
JAMA Intern Med. 2013 Aug 12;173(15):1397-404. doi: 10.1001/jamainternmed.2013.7734.
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Progress on the development of rapid methods for antimicrobial susceptibility testing.抗菌药物敏感性快速检测方法的研发进展
J Antimicrob Chemother. 2013 Dec;68(12):2710-7. doi: 10.1093/jac/dkt253. Epub 2013 Jun 30.
5
Epidemic diffusion of KPC carbapenemase-producing Klebsiella pneumoniae in Italy: results of the first countrywide survey, 15 May to 30 June 2011.意大利产 KPC 碳青霉烯酶肺炎克雷伯菌的流行扩散:2011 年 5 月 15 日至 6 月 30 日首次全国调查结果。
Euro Surveill. 2013 May 30;18(22):20489.
6
Bacteraemia due to OXA-48-carbapenemase-producing Enterobacteriaceae: a major clinical challenge.产 OXA-48 碳青霉烯酶肠杆菌科细菌导致的菌血症:主要临床挑战。
Clin Microbiol Infect. 2013 Feb;19(2):E72-9. doi: 10.1111/1469-0691.12091. Epub 2012 Dec 12.
7
Carbapenemases in Klebsiella pneumoniae and other Enterobacteriaceae: an evolving crisis of global dimensions.肺炎克雷伯菌和其他肠杆菌科细菌中的碳青霉烯酶:具有全球范围的不断演变的危机。
Clin Microbiol Rev. 2012 Oct;25(4):682-707. doi: 10.1128/CMR.05035-11.
8
Tracking a hospital outbreak of carbapenem-resistant Klebsiella pneumoniae with whole-genome sequencing.应用全基因组测序追踪医院碳青霉烯类耐药肺炎克雷伯菌暴发疫情
Sci Transl Med. 2012 Aug 22;4(148):148ra116. doi: 10.1126/scitranslmed.3004129.
9
Rapid whole-genome sequencing for investigation of a neonatal MRSA outbreak.应用全基因组快速测序调查新生儿耐甲氧西林金黄色葡萄球菌爆发疫情
N Engl J Med. 2012 Jun 14;366(24):2267-75. doi: 10.1056/NEJMoa1109910.
10
Identification and screening of carbapenemase-producing Enterobacteriaceae.碳青霉烯酶肠杆菌科的鉴定和筛选。
Clin Microbiol Infect. 2012 May;18(5):432-8. doi: 10.1111/j.1469-0691.2012.03815.x.

通过靶向新一代测序对耐碳青霉烯类肺炎克雷伯菌分离株进行快速耐药基因组指纹图谱分析和克隆谱系分析。

Rapid resistome fingerprinting and clonal lineage profiling of carbapenem-resistant Klebsiella pneumoniae isolates by targeted next-generation sequencing.

作者信息

Arena Fabio, Rolfe P Alexander, Doran Graeme, Conte Viola, Gruszka Sarah, Clarke Thomas, Adesokan Yemi, Giani Tommaso, Rossolini Gian Maria

机构信息

Department of Medical Biotechnologies, University of Siena, Siena, Italy.

出版信息

J Clin Microbiol. 2014 Mar;52(3):987-90. doi: 10.1128/JCM.03247-13. Epub 2014 Jan 8.

DOI:10.1128/JCM.03247-13
PMID:24403299
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3957740/
Abstract

Thirty-two carbapenem-resistant Klebsiella pneumoniae isolates, representative of different resistance mechanisms and clonal lineages, were analyzed with the Pathogenica HAI BioDetection system, based on targeted next-generation sequencing (NGS) technology. With most strains, the system simultaneously yielded comprehensive information on relevant β-lactam resistance determinants and accurate discrimination of clonal lineages, in a shorter time frame and in a less labor-intensive manner than currently available methods for molecular epidemiology analysis. Results supported the usefulness of targeted NGS-based technologies for similar applications.

摘要

基于靶向新一代测序(NGS)技术,使用Pathogenica HAI生物检测系统对32株耐碳青霉烯类肺炎克雷伯菌分离株进行了分析,这些分离株代表了不同的耐药机制和克隆谱系。对于大多数菌株,该系统能在更短的时间内,以比目前分子流行病学分析方法更低的劳动强度,同时提供有关相关β-内酰胺耐药决定因素的全面信息,并准确区分克隆谱系。结果支持了基于靶向NGS的技术在类似应用中的实用性。