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大肠杆菌O157:H7菌株2886 - 75的基因组序列，与美国首例人类感染报告病例相关。

Genome Sequence of Escherichia coli O157:H7 Strain 2886-75, Associated with the First Reported Case of Human Infection in the United States.

作者信息

Sanjar Fatemeh, Hazen Tracy H, Shah Sadiq M, Koenig Sara S K, Agrawal Sonia, Daugherty Sean, Sadzewicz Lisa, Tallon Luke J, Mammel Mark K, Feng Peter, Soderlund Robert, Tarr Phillip I, Debroy Chitrita, Dudley Edward G, Cebula Thomas A, Ravel Jacques, Fraser Claire M, Rasko David A, Eppinger Mark

机构信息

University of Texas at San Antonio, Department of Biology and South Texas Center for Emerging Infectious Diseases, San Antonio, Texas, USA.

出版信息

Genome Announc. 2014 Jan 9;2(1):e01120-13. doi: 10.1128/genomeA.01120-13.

DOI:10.1128/genomeA.01120-13
PMID:24407635
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3886948/
Abstract

First identified in 1982 as a human pathogen, enterohemorrhagic Escherichia coli of the O157:H7 serotype is a major cause of food-borne acquired human infections. Here, we report the genome sequence of the first known strain of this serotype isolated in the United States.

摘要

1982年首次被鉴定为人类病原体的O157:H7血清型肠出血性大肠杆菌是食源性人类感染的主要病因。在此，我们报告在美国分离出的该血清型首个已知菌株的基因组序列。

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本文引用的文献

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Whole-Genome Draft Sequences of 26 Enterohemorrhagic Escherichia coli O157:H7 Strains.26株肠出血性大肠杆菌O157:H7的全基因组草图序列
Genome Announc. 2013 Feb 28;1(2):e0013412. doi: 10.1128/genomeA.00134-12.
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Genomic anatomy of Escherichia coli O157:H7 outbreaks.大肠杆菌 O157:H7 疫情的基因组解剖学
Proc Natl Acad Sci U S A. 2011 Dec 13;108(50):20142-7. doi: 10.1073/pnas.1107176108. Epub 2011 Nov 30.
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The IGS Standard Operating Procedure for Automated Prokaryotic Annotation.IGS 原核生物自动注释标准操作规程。
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Genome signatures of Escherichia coli O157:H7 isolates from the bovine host reservoir.从牛宿主中分离的大肠杆菌 O157:H7 分离株的基因组特征。
Appl Environ Microbiol. 2011 May;77(9):2916-25. doi: 10.1128/AEM.02554-10. Epub 2011 Mar 18.
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Analysis of Escherichia coli O157 clinical isolates by multilocus sequence typing.通过多位点序列分型对大肠杆菌O157临床分离株进行分析。
BMC Res Notes. 2010 Dec 21;3:343. doi: 10.1186/1756-0500-3-343.
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Using the Velvet de novo assembler for short-read sequencing technologies.将Velvet从头组装程序用于短读长测序技术。
Curr Protoc Bioinformatics. 2010 Sep;Chapter 11:Unit 11.5. doi: 10.1002/0471250953.bi1105s31.
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In silico genomic analyses reveal three distinct lineages of Escherichia coli O157:H7, one of which is associated with hyper-virulence.计算机模拟基因组分析揭示了大肠杆菌O157:H7的三个不同谱系，其中一个与高毒力有关。
BMC Genomics. 2009 Jun 29;10:287. doi: 10.1186/1471-2164-10-287.
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Escherichia coli O157:H7 strain origin, lineage, and Shiga toxin 2 expression affect colonization of cattle.大肠杆菌O157:H7菌株的来源、谱系及志贺毒素2的表达会影响其在牛体内的定殖。
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Proc Natl Acad Sci U S A. 2009 May 26;106(21):8713-8. doi: 10.1073/pnas.0812949106. Epub 2009 May 13.