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水稻Rac/Rop GTP酶OsRac1的纯化、结晶及初步X射线晶体学分析

Purification, crystallization and preliminary X-ray crystallographic analysis of a rice Rac/Rop GTPase, OsRac1.

作者信息

Kosami Ken-ichi, Ohki Izuru, Hayashi Kokoro, Tabata Ryo, Usugi Sayaka, Kawasaki Tsutomu, Fujiwara Toshimichi, Nakagawa Atsushi, Shimamoto Ko, Kojima Chojiro

机构信息

Institute for Protein Research, Osaka University, 3-2 Yamadaoka, Suita, Osaka 565-0871, Japan.

Laboratory of Biophysics, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara 630-0192, Japan.

出版信息

Acta Crystallogr F Struct Biol Commun. 2014 Jan;70(Pt 1):113-5. doi: 10.1107/S2053230X13033645. Epub 2013 Dec 24.

Abstract

Small GTPases regulate a large variety of key cellular processes. Plant small Rac/Rop GTPases have recently received broad attention as it is becoming clear that these enzymes regulate various plant cellular processes. OsRac1, a rice Rac/Rop protein, is a key regulator of reactive oxygen species (ROS) production and induces immune responses. Although four structures of plant small GTPases have been reported, all of these were of the inactive form. Here, OsRac1 was purified and co-crystallized with the GTP analogue 5'-guanylyl imidodiphosphate (GMPPNP). The crystal belonged to space group P2(1)2(1)2(1) and a complete data set was collected to 1.9 Å resolution.

摘要

小GTP酶调节多种关键的细胞过程。植物小Rac/Rop GTP酶最近受到了广泛关注,因为越来越清楚的是,这些酶调节各种植物细胞过程。水稻Rac/Rop蛋白OsRac1是活性氧(ROS)产生的关键调节因子,并诱导免疫反应。尽管已经报道了植物小GTP酶的四种结构,但所有这些都是非活性形式。在这里,OsRac1被纯化并与GTP类似物5'-鸟苷酰亚胺二磷酸(GMPPNP)共结晶。晶体属于空间群P2(1)2(1)2(1),并收集了完整的数据集,分辨率达到1.9 Å。

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本文引用的文献

1
Processing of X-ray diffraction data collected in oscillation mode.
Methods Enzymol. 1997;276:307-26. doi: 10.1016/S0076-6879(97)76066-X.
2
New insights into Rho signaling from plant ROP/Rac GTPases.
Trends Cell Biol. 2012 Sep;22(9):492-501. doi: 10.1016/j.tcb.2012.05.002. Epub 2012 Jul 12.
3
RHO GTPase in plants: Conservation and invention of regulators and effectors.
Small GTPases. 2010 Sep;1(2):78-88. doi: 10.4161/sgtp.1.2.14544.
4
Rho proteins of plants--functional cycle and regulation of cytoskeletal dynamics.
Eur J Cell Biol. 2011 Nov;90(11):934-43. doi: 10.1016/j.ejcb.2010.11.009. Epub 2011 Jan 28.
6
Structure of the N-terminal regulatory domain of a plant NADPH oxidase and its functional implications.
J Biol Chem. 2010 Jan 8;285(2):1435-45. doi: 10.1074/jbc.M109.058909. Epub 2009 Oct 28.
7
Regulation of rice NADPH oxidase by binding of Rac GTPase to its N-terminal extension.
Plant Cell. 2007 Dec;19(12):4022-34. doi: 10.1105/tpc.107.055624. Epub 2007 Dec 21.
8
The crystal structure of Arabidopsis thaliana RAC7/ROP9: the first RAS superfamily GTPase from the plant kingdom.
Phytochemistry. 2006 Nov;67(21):2332-40. doi: 10.1016/j.phytochem.2006.08.011. Epub 2006 Sep 26.
9
RAC/ROP GTPases: 'hubs' for signal integration and diversification in plants.
Trends Plant Sci. 2006 Jun;11(6):309-15. doi: 10.1016/j.tplants.2006.04.003. Epub 2006 Jun 5.
10
Involvement of the small GTPase Rac in the defense responses of tobacco to pathogens.
Mol Plant Microbe Interact. 2005 Feb;18(2):116-24. doi: 10.1094/MPMI-18-0116.

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