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本文引用的文献

1
Response of microbial communities to long-term fertilization depends on their microhabitat.微生物群落对长期施肥的响应取决于其微生境。
FEMS Microbiol Ecol. 2013 Oct;86(1):71-84. doi: 10.1111/1574-6941.12092. Epub 2013 Mar 6.
2
Identification of bacteria utilizing biphenyl, benzoate, and naphthalene in long-term contaminated soil.鉴定长期污染土壤中利用联苯、苯甲酸和萘的细菌。
PLoS One. 2012;7(7):e40653. doi: 10.1371/journal.pone.0040653. Epub 2012 Jul 13.
3
Betaproteobacteria dominance and diversity shifts in the bacterial community of a PAH-contaminated soil exposed to phenanthrene.在菲污染土壤中,β变形菌在细菌群落中占优势且多样性发生变化。
Environ Pollut. 2012 Mar;162:345-53. doi: 10.1016/j.envpol.2011.11.032. Epub 2011 Dec 21.
4
Sorption kinetics of hydrophobic organic compounds to natural sediments and soils.疏水性有机化合物在天然沉积物和土壤中的吸附动力学
Environ Sci Technol. 1986 Jul 1;20(7):717-25. doi: 10.1021/es00149a011.
5
Sorption of phenol by selected biopolymers: isotherms, energetics, and polarity.特定生物聚合物对苯酚的吸附:等温线、能量学及极性
Environ Sci Technol. 1994 Mar 1;28(3):466-73. doi: 10.1021/es00052a019.
6
Root exudates modify bacterial diversity of phenanthrene degraders in PAH-polluted soil but not phenanthrene degradation rates.根系分泌物改变了多环芳烃污染土壤中菲降解菌的多样性,但不影响菲的降解速率。
Environ Microbiol. 2011 Mar;13(3):722-36. doi: 10.1111/j.1462-2920.2010.02376.x. Epub 2010 Nov 18.
7
Comparison of DNA- and RNA-based bacterial community structures in soil exposed to 2,4-dichlorophenol.暴露于 2,4-二氯苯酚土壤中的细菌群落 DNA 和 RNA 结构比较。
J Appl Microbiol. 2009 Dec 1;107(6):1883-93. doi: 10.1111/j.1365-2672.2009.04369.x.
8
pH-Dependent sorption of acidic organic chemicals to soil organic matter.pH 值依赖的酸性有机化学品在土壤有机质上的吸附。
Environ Sci Technol. 2009 Dec 15;43(24):9189-95. doi: 10.1021/es902272j.
9
Stable isotope probing reveals Trichosporon yeast to be active in situ in soil phenol metabolism.稳定同位素探测显示,丝孢酵母在土壤苯酚代谢过程中在原位具有活性。
ISME J. 2009 Apr;3(4):477-85. doi: 10.1038/ismej.2008.122. Epub 2008 Dec 18.
10
The Ribosomal Database Project: improved alignments and new tools for rRNA analysis.核糖体数据库项目:改进的比对方法及用于rRNA分析的新工具。
Nucleic Acids Res. 2009 Jan;37(Database issue):D141-5. doi: 10.1093/nar/gkn879. Epub 2008 Nov 12.

土壤有机质对参与有机污染物降解的微生物多样性的重要性。

Importance of soil organic matter for the diversity of microorganisms involved in the degradation of organic pollutants.

机构信息

Thünen Institute of Biodiversity, Federal Research Institute for Rural Areas, Forestry and Fisheries, Bundesallee 50, Braunschweig, Germany.

出版信息

ISME J. 2014 Jun;8(6):1289-300. doi: 10.1038/ismej.2013.233. Epub 2014 Jan 16.

DOI:10.1038/ismej.2013.233
PMID:24430482
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4030228/
Abstract

Many organic pollutants are readily degradable by microorganisms in soil, but the importance of soil organic matter for their transformation by specific microbial taxa is unknown. In this study, sorption and microbial degradation of phenol and 2,4-dichlorophenol (DCP) were characterized in three soil variants, generated by different long-term fertilization regimes. Compared with a non-fertilized control (NIL), a mineral-fertilized NPK variant showed 19% and a farmyard manure treated FYM variant 46% more soil organic carbon (SOC). Phenol sorption declined with overall increasing SOC because of altered affinities to the clay fraction (soil particles <2 mm in diameter). In contrast, DCP sorption correlated positively with particulate soil organic matter (present in the soil particle fractions of 63-2000 μm). Stable isotope probing identified Rhodococcus, Arthrobacter (both Actinobacteria) and Cryptococcus (Basidiomycota) as the main degraders of phenol. Rhodococcus and Cryptococcus were not affected by SOC, but the participation of Arthrobacter declined in NPK and even more in FYM. (14)C-DCP was hardly metabolized in the NIL variant, more efficiently in FYM and most in NPK. In NPK, Burkholderia was the main degrader and in FYM Variovorax. This study demonstrates a strong effect of SOC on the partitioning of organic pollutants to soil particle size fractions and indicates the profound consequences that this process could have for the diversity of bacteria involved in their degradation.

摘要

许多有机污染物很容易被土壤中的微生物降解,但土壤有机质对特定微生物类群转化它们的重要性尚不清楚。在这项研究中,通过三种不同长期施肥制度产生的土壤变体,研究了苯酚和 2,4-二氯苯酚(DCP)的吸附和微生物降解。与未施肥对照(NIL)相比,矿物肥料 NPK 变体的土壤有机碳(SOC)增加了 19%,而厩肥处理的 FYM 变体则增加了 46%。由于对粘土部分(直径<2 毫米的土壤颗粒)的亲和力发生变化,苯酚的吸附随着总 SOC 的增加而下降。相比之下,DCP 的吸附与颗粒状土壤有机质呈正相关(存在于 63-2000 微米的土壤颗粒部分中)。稳定同位素探测确定了节杆菌属(放线菌)、节杆菌属(放线菌)和隐球菌属(担子菌)是苯酚的主要降解菌。节杆菌属和隐球菌属不受 SOC 影响,但 Arthrobacter 的参与在 NPK 中减少,在 FYM 中甚至更多。14C-DCP 在 NIL 变体中几乎不被代谢,在 FYM 中更有效,在 NPK 中最有效。在 NPK 中,伯克霍尔德菌是主要的降解菌,在 FYM 中是沃氏菌。本研究表明 SOC 对有机污染物分配到土壤颗粒大小分数有很强的影响,并表明这一过程对参与其降解的细菌多样性可能产生深远的影响。