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α-H 携带涉及偕二羟基的氢键信息:以 1,1,1,3,3,3-六氟-2-丙醇和叔胺氢键复合物为例。

Cα-H carries information of a hydrogen bond involving the geminal hydroxyl group: a case study with a hydrogen-bonded complex of 1,1,1,3,3,3-hexafluoro-2-propanol and tertiary amines.

机构信息

Structural Biology and Bioinformatics Division, CSIR-Indian Institute of Chemical Biology , 4, Raja S.C. Mullick Road, Kolkata 700032, India.

出版信息

J Phys Chem A. 2014 Feb 13;118(6):1024-30. doi: 10.1021/jp411488a. Epub 2014 Jan 30.

Abstract

Experimental measurement of the contribution of H-bonding to intermolecular and intramolecular interactions that provide specificity to biological complex formation is an important aspect of macromolecular chemistry and structural biology. However, there are very few viable methods available to determine the energetic contribution of an individual hydrogen bond to binding and catalysis in biological systems. Therefore, the methods that use secondary deuterium isotope effects analyzed by NMR or equilibrium or kinetic isotope effect measurements are attractive ways to gain information on the H-bonding properties of an alcohol system, particularly in a biological environment. Here, we explore the anharmonic contribution to the C-H group when the O-H group of 1,1,1,3,3,3-hexafluoro-2-propanol (HFP) forms an intermolecular H-bond with the amines by quantum mechanical calculations and by experimentally measuring the H/D effect by NMR. Within the framework of density functional theory, ab initio calculations were carried out for HFP in its two different conformational states and their H-bonded complexes with tertiary amines to determine the (13)C chemical shielding, change in their vibrational equilibrium distances, and the deuterium isotope effect on (13)C2 (secondary carbon) of HFP upon formation of complexes with tertiary amines. When C2-OH was involved in hydrogen bond formation (O-H as hydrogen donor), it weakened the geminal C2-H bond; it was reflected in the NMR chemical shift, coupling constant, and the equilibrium distances of the C-H bond. The first derivative of nuclear shielding at C2 in HFP was -48.94 and -50.73 ppm Å(-1) for anti and gauche conformations, respectively. In the complex, the values were -50.28 and -50.76 ppm Å(-1), respectively. The C-H stretching frequency was lower than the free monomer, indicating enhanced anharmonicity in the C-H bond in the complex form. In chloroform, HFP formed a complex with the amine; δC2 was 69.107 ppm for HFP-triethylamine and 68.766 ppm for HFP-d2-triethylamine and the difference in chemical shift, the ΔδC2 was 341 ppb. The enhanced anharmonicity in the hydrogen-bonded complex resulted in a larger vibrational equilibrium distance in C-H/D bonds. An analysis with the Morse potential function indicated that the enhanced anharmonicity encountered in the bond was the origin of a larger isotope effect and the equilibrium distances. Change in vibrational equilibrium distance and the deuterium isotope effect, as observed in the complex, could be used as parameters in monitoring the strength of the H-bond in small model systems with promising application in biomacromolecules.

摘要

实验测量氢键对生物复合物形成提供特异性的分子间和分子内相互作用的贡献是高分子化学和结构生物学的一个重要方面。然而,在生物系统中确定氢键对结合和催化的能量贡献的方法非常有限。因此,使用通过 NMR 或平衡或动力学同位素效应测量分析的二级氘同位素效应的方法是获取有关醇体系氢键性质的信息的有吸引力的方法,特别是在生物环境中。在这里,我们通过量子力学计算和通过 NMR 实验测量来探索 1,1,1,3,3,3-六氟-2-丙醇(HFP)的 O-H 基团与胺形成分子间氢键时 C-H 基团的非谐贡献。在密度泛函理论的框架内,对 HFP 在其两种不同构象状态及其与叔胺形成的氢键复合物进行了从头算计算,以确定(13)C 化学位移、它们的振动平衡距离的变化以及(13)C2 的氘同位素效应(HFP 与叔胺形成复合物时的仲碳原子)。当 C2-OH 参与氢键形成(O-H 作为氢供体)时,它削弱了偕二甲基 C2-H 键;这反映在 NMR 化学位移、耦合常数和 C-H 键的平衡距离上。在 HFP 中,C2 处核屏蔽的一阶导数分别为反式和 gauche 构象的-48.94 和-50.73 ppm Å(-1)。在复合物中,相应的值分别为-50.28 和-50.76 ppm Å(-1)。C-H 伸缩频率低于游离单体,表明在复合物形式中 C-H 键的非谐性增强。在氯仿中,HFP 与胺形成复合物;HFP-三乙胺的 δC2 为 69.107 ppm,HFP-d2-三乙胺的 δC2 为 68.766 ppm,化学位移差为 341 ppb。氢键复合物中增强的非谐性导致 C-H/D 键的振动平衡距离增大。Morse 势能函数的分析表明,键中遇到的增强非谐性是较大同位素效应和平衡距离的起源。在复合物中观察到的振动平衡距离的变化和氘同位素效应可以用作监测小分子模型系统中氢键强度的参数,在生物大分子中有很好的应用前景。

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