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探寻细菌陆地定殖的统一观点。

The quest for a unified view of bacterial land colonization.

机构信息

CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China.

Key Lab of Rubber Biology, Ministry of Agriculture and Rubber Research Institute, Chinese Academy of Tropical Agricultural Sciences, Danzhou, China.

出版信息

ISME J. 2014 Jul;8(7):1358-69. doi: 10.1038/ismej.2013.247. Epub 2014 Jan 23.

Abstract

Exploring molecular mechanisms underlying bacterial water-to-land transition represents a critical start toward a better understanding of the functioning and stability of the terrestrial ecosystems. Here, we perform comprehensive analyses based on a large variety of bacteria by integrating taxonomic, phylogenetic and metagenomic data, in the quest for a unified view that elucidates genomic, evolutionary and ecological dynamics of the marine progenitors in adapting to nonaquatic environments. We hypothesize that bacterial land colonization is dominated by a single-gene sweep, that is, the emergence of dnaE2 derived from an early duplication event of the primordial dnaE, followed by a series of niche-specific genomic adaptations, including GC content increase, intensive horizontal gene transfer and constant genome expansion. In addition, early bacterial radiation may be stimulated by an explosion of land-borne hosts (for example, plants and animals) after initial land colonization events.

摘要

探索细菌从水生到陆生转变的分子机制代表了向更好地理解陆地生态系统的功能和稳定性迈出的关键一步。在这里,我们通过整合分类学、系统发育和宏基因组数据,对大量细菌进行了全面分析,以期形成一种统一的观点,阐明海洋祖先适应非水生环境的基因组、进化和生态动态。我们假设细菌的陆地定殖主要由单一基因的横扫所主导,即源自原始 dnaE 早期复制事件的 dnaE2 的出现,随后是一系列特定于小生境的基因组适应,包括 GC 含量增加、密集的水平基因转移和不断的基因组扩张。此外,早期细菌辐射可能是由初始陆地定殖事件后陆地宿主(例如植物和动物)的爆炸所刺激的。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0ba2/4069389/9646c10e0e9e/ismej2013247f1.jpg

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