Agricultural Microbiology Division, National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, Republic of Korea.
Int J Syst Evol Microbiol. 2014 May;64(Pt 5):1552-1558. doi: 10.1099/ijs.0.057372-0. Epub 2014 Jan 29.
A Gram-stain-negative bacterium, strain 5410S-62T, was isolated from an air sample collected in Suwon, Republic of Korea. It was aerobic, motile, mesophilic and formed rod-shaped cells. Colonies on R2A agar were convex, circular and pale orange with entire margins. Growth occurred at pH 5-9 (optimally at pH 7) and at 10-40 °C (optimally at 28 °C). It did not grow in the presence of 1% NaCl. Comparative analyses of 16S rRNA gene sequences demonstrated that the novel strain was closely related to members of the genus Noviherbaspirillum. Strain 5410S-62T showed the highest sequence similarity (98.2%) to Glaciimonas singularis A2-57T. It also showed high 16S rRNA gene sequence similarity (98.1-95.6%) to members of the genus Noviherbaspirillum (98.1% to Noviherbaspirillum aurantiacum SUEMI08T, 97.8% to Noviherbaspirillum soli SUEMI10T and Noviherbaspirillum canariense SUEMI03T, 97.6% to Noviherbaspirillum psychrotolerans PB1T and 95.6% to Noviherbaspirillum malthae CC-AFH3T). The strain contained summed feature 3 (C16:1ω6c and/or C16:1ω7c), C16:0 and summed feature 8 (C18:1ω6c and/or C18:1ω7c) as major fatty acids, Q-8 as the only ubiquinone and large amounts of phosphatidylethanolamine, diphosphatidylglycerol and phosphatidylglycerol. Strain 5410S-62T revealed less than 70% DNA-DNA relatedness with the type strains of closely related species of the genera Noviherbaspirillum and Herbaspirillum and Glaciimonas singularis. Based on the physiological, biochemical and chemotaxonomic data obtained in this study, it is proposed that strain 5410S-62T represents a novel species, Noviherbaspirillum suwonense sp. nov., with 5410S-62T (=KACC 16657T= NBRC 108944T) as the type strain.
一株革兰氏阴性细菌,菌株 5410S-62T,从韩国水原采集的空气样本中分离得到。它是需氧的、运动的、中温的,形成杆状细胞。在 R2A 琼脂上的菌落呈凸形、圆形和淡橙色,边缘整齐。生长在 pH5-9(最佳 pH7)和 10-40°C(最佳 28°C)。在 1%NaCl 存在下不生长。16S rRNA 基因序列的比较分析表明,该新菌株与 Noviherbaspirillum 属的成员密切相关。菌株 5410S-62T 与 Glaciimonas singularis A2-57T 的序列相似性最高(98.2%)。它还与 Noviherbaspirillum 属的成员表现出高的 16S rRNA 基因序列相似性(98.1-95.6%),包括 Noviherbaspirillum aurantiacum SUEMI08T(98.1%)、Noviherbaspirillum soli SUEMI10T 和 Noviherbaspirillum canariense SUEMI03T(97.8%)、Noviherbaspirillum psychrotolerans PB1T(97.6%)和 Noviherbaspirillum malthae CC-AFH3T(95.6%)。该菌株含有 sumed feature 3(C16:1ω6c 和/或 C16:1ω7c)、C16:0 和 summed feature 8(C18:1ω6c 和/或 C18:1ω7c)作为主要脂肪酸,Q-8 作为唯一的泛醌和大量的磷脂酰乙醇胺、双磷脂酰甘油和磷脂酰甘油。菌株 5410S-62T 与 Noviherbaspirillum 和 Herbaspirillum 属以及 Glaciimonas singularis 的密切相关种的模式菌株的 DNA-DNA 相关性低于 70%。基于本研究获得的生理、生化和化学分类学数据,建议菌株 5410S-62T 代表一个新种,Noviherbaspirillum suwonense sp. nov.,以 5410S-62T(=KACC 16657T= NBRC 108944T)为模式菌株。