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描述从污染土壤中分离得到的新菌属 Noviherbaspirillum malthae 及其新种,建议将土壤杆菌属的 Herbaspirillum soli、Herbaspirillum aurantiacum、Herbaspirillum canariense 和 Herbaspirillum psychrotolerans 重新分类为 Noviherbaspirillum soli 组合新种、Noviherbaspirillum aurantiacum 组合新种、Noviherbaspirillum canariense 组合新种和 Noviherbaspirillum psychrotolerans 组合新种,基于多相分析。

Description of Noviherbaspirillum malthae gen. nov., sp. nov., isolated from an oil-contaminated soil, and proposal to reclassify Herbaspirillum soli, Herbaspirillum aurantiacum, Herbaspirillum canariense and Herbaspirillum psychrotolerans as Noviherbaspirillum soli comb. nov., Noviherbaspirillum aurantiacum comb. nov., Noviherbaspirillum canariense comb. nov. and Noviherbaspirillum psychrotolerans comb. nov. based on polyphasic analysis.

机构信息

Department of Soil and Environmental Sciences, College of Agriculture and Natural Resources, National Chung Hsing University, Taichung, Taiwan.

Yenepoya Research Center, Yenepoya University, University Rd, Deralakatee, Mangalore, Karnataka State, India.

出版信息

Int J Syst Evol Microbiol. 2013 Nov;63(Pt 11):4100-4107. doi: 10.1099/ijs.0.048231-0. Epub 2013 Jun 7.

Abstract

An aerobic, Gram-negative, rod-shaped bacterium with polar flagella, strain CC-AFH3(T), was isolated from an oil-contaminated site located in Kaohsiung county, Taiwan. Strain CC-AFH3(T) grew at 20-40 °C, pH 5.0-10.0 and <2 % (w/v) NaCl. 16S rRNA gene sequence analysis indicated that strain CC-AFH3(T) showed the greatest degree of similarity to Herbaspirillum soli SUEMI10(T) (96.5 %), H. aurantiacum SUEMI08(T) (96.3 %), H. canariense SUEMI03(T) (96.0 %), H. psychrotolerans PB1(T) (95.4 %) and members of other Herbaspirillum species (94.1-95.2 %), and lower similarity to members of other genera (<94 %). Phylogenetic analyses also positioned the novel strain in the genus Herbaspirillum as an independent lineage. The major fatty acids in strain CC-AFH3(T) were C10 : 0 3-OH, C12 : 0, C14 : 0 2-OH, C16 : 0, iso-C15 : 0 3-OH, C17 : 0 cyclo, C16 : 1ω7c/C16 : 1ω6c and C18 : 1ω7c/C18 : 1ω6c. The major polar lipids of strain CC-AFH3(T) were diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol and phosphatidylcholine. The predominant quinone was ubiquinone 8 (Q-8) and the DNA G+C content was 63.4 mol%. On the basis of 16S rRNA gene sequence analysis in combination with physiological and chemotaxonomic data, strain CC-AFH3(T) represents a novel species in a new genus, for which we propose the name Noviherbaspirillum malthae gen. nov., sp. nov.; the type strain of Noviherbaspirillum malthae is CC-AFH3(T) ( = BCRC 80516(T) = JCM 18414(T)). We also propose the reclassification of Herbaspirillum soli, Herbaspirillum aurantiacum, Herbaspirillum canariense and 'Herbaspirillum psychrotolerans' as Noviherbaspirillum soli comb. nov. (type strain SUEMI10(T) = LMG 26149(T) = CECT 7840(T)), Noviherbaspirillum aurantiacum comb. nov. (type strain SUEMI08(T) = LMG 26150(T) = CECT 7839(T)), Noviherbaspirillum canariense comb. nov. (type strain SUEMI03(T) = LMG 26151(T) = CECT 7838(T)) and Noviherbaspirillum psychrotolerans comb. nov. (type strain PB1(T) = DSM 26001(T) = LMG 27282(T)), respectively. An emended description of Herbaspirillum seropedicae is also presented.

摘要

一株好氧、革兰氏阴性、杆状、极生鞭毛的细菌,菌株 CC-AFH3(T),从台湾高雄县的一个受石油污染的地点分离得到。菌株 CC-AFH3(T)在 20-40°C、pH5.0-10.0 和 <2%(w/v)NaCl 的条件下生长。16S rRNA 基因序列分析表明,菌株 CC-AFH3(T)与苏美 10 号土壤杆菌(Herbaspirillum soli SUEMI10(T))(96.5%)、苏美 08 号橙黄杆菌(H. aurantiacum SUEMI08(T))(96.3%)、苏美 03 号卡纳里恩氏杆菌(H. canariense SUEMI03(T))(96.0%)、PB1 号耐寒杆菌(H. psychrotolerans PB1(T))(95.4%)和其他土壤杆菌种(94.1-95.2%)的相似度最高,与其他属的成员(<94%)的相似度较低。系统发育分析也将新菌株定位于土壤杆菌属的一个独立谱系。菌株 CC-AFH3(T)的主要脂肪酸为 C10:0 3-OH、C12:0、C14:0 2-OH、C16:0、iso-C15:0 3-OH、C17:0 环、C16:1ω7c/C16:1ω6c 和 C18:1ω7c/C18:1ω6c。菌株 CC-AFH3(T)的主要极性脂为双磷脂酰甘油、磷脂酰乙醇胺、磷脂酰甘油和磷脂酰胆碱。主要的醌为泛醌 8(Q-8),DNA G+C 含量为 63.4 mol%。基于 16S rRNA 基因序列分析,并结合生理和化学分类数据,菌株 CC-AFH3(T)代表一个新属中的一个新种,我们建议将其命名为 Noviherbaspirillum malthae 属,种。 nov.;Noviherbaspirillum malthae 的模式菌株是 CC-AFH3(T)(=BCRC 80516(T)=JCM 18414(T))。我们还建议将苏美 10 号土壤杆菌、橙黄杆菌、卡纳里恩氏杆菌和“耐寒土壤杆菌”重新分类为 Noviherbaspirillum soli 组合。 nov.(模式株 SUEMI10(T)=LMG 26149(T)=CECT 7840(T))、Noviherbaspirillum aurantiacum 组合。 nov.(模式株 SUEMI08(T)=LMG 26150(T)=CECT 7839(T))、Noviherbaspirillum canariense 组合。 nov.(模式株 SUEMI03(T)=LMG 26151(T)=CECT 7838(T))和 Noviherbaspirillum psychrotolerans 组合。 nov.(模式株 PB1(T)=DSM 26001(T)=LMG 27282(T)),分别。还提出了土壤杆菌属植物血清型的修订描述。

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