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本文引用的文献

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MAFFT multiple sequence alignment software version 7: improvements in performance and usability.MAFFT 多序列比对软件版本 7:性能和易用性的改进。
Mol Biol Evol. 2013 Apr;30(4):772-80. doi: 10.1093/molbev/mst010. Epub 2013 Jan 16.
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The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013.PRIDE 数据库及相关工具:2013 年的现状。
Nucleic Acids Res. 2013 Jan;41(Database issue):D1063-9. doi: 10.1093/nar/gks1262. Epub 2012 Nov 29.
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Secretion and maturation of conotoxins in the venom ducts of Conus textile.纺织芋螺毒液管中芋螺毒素的分泌和成熟。
Toxicon. 2012 Dec 15;60(8):1370-9. doi: 10.1016/j.toxicon.2012.09.013. Epub 2012 Sep 29.
4
Conus consors snail venom proteomics proposes functions, pathways, and novel families involved in its venomic system.康布斯芋螺毒液蛋白质组学提出了其毒液系统中涉及的功能、途径和新家族。
J Proteome Res. 2012 Oct 5;11(10):5046-58. doi: 10.1021/pr3006155. Epub 2012 Sep 12.
5
Modulation of conotoxin structure and function is achieved through a multienzyme complex in the venom glands of cone snails.通过在芋螺毒液腺中的多酶复合物,实现芋螺毒素结构和功能的调节。
J Biol Chem. 2012 Oct 5;287(41):34288-303. doi: 10.1074/jbc.M112.366781. Epub 2012 Aug 13.
6
Elucidation of the molecular envenomation strategy of the cone snail Conus geographus through transcriptome sequencing of its venom duct.通过 Cone snail Conus geographus 毒腺转录组测序阐明其分子中毒策略。
BMC Genomics. 2012 Jun 28;13:284. doi: 10.1186/1471-2164-13-284.
7
Large-scale discovery of conopeptides and conoproteins in the injectable venom of a fish-hunting cone snail using a combined proteomic and transcriptomic approach.采用蛋白质组学和转录组学相结合的方法从猎食性芋螺的可注射毒液中大规模发现 conopeptides 和 conoproteins。
J Proteomics. 2012 Sep 18;75(17):5215-25. doi: 10.1016/j.jprot.2012.06.001. Epub 2012 Jun 13.
8
Recruitment of glycosyl hydrolase proteins in a cone snail venomous arsenal: further insights into biomolecular features of Conus venoms.在圆锥蜗牛毒液武器库中招募糖基水解酶蛋白:对圆锥蜗牛毒液生物分子特征的进一步了解。
Mar Drugs. 2012 Feb;10(2):258-280. doi: 10.3390/md10020258. Epub 2012 Jan 31.
9
Insights into the regulation of protein abundance from proteomic and transcriptomic analyses.从蛋白质组学和转录组学分析中洞察蛋白质丰度的调控。
Nat Rev Genet. 2012 Mar 13;13(4):227-32. doi: 10.1038/nrg3185.
10
Developmental modularity and phenotypic novelty within a biphasic life cycle: morphogenesis of a cone snail venom gland.双相生活史中的发育模块性和表型新颖性:圆锥蜗牛毒液腺的形态发生。
Proc Biol Sci. 2012 Jan 7;279(1726):77-83. doi: 10.1098/rspb.2011.0501. Epub 2011 May 18.

对地理芋螺毒腺进行蛋白质组学和转录组学联合分析,发现了新的成分和功能分区。

Combined proteomic and transcriptomic interrogation of the venom gland of Conus geographus uncovers novel components and functional compartmentalization.

作者信息

Safavi-Hemami Helena, Hu Hao, Gorasia Dhana G, Bandyopadhyay Pradip K, Veith Paul D, Young Neil D, Reynolds Eric C, Yandell Mark, Olivera Baldomero M, Purcell Anthony W

机构信息

Department of Biology and.

出版信息

Mol Cell Proteomics. 2014 Apr;13(4):938-53. doi: 10.1074/mcp.M113.031351. Epub 2014 Jan 29.

DOI:10.1074/mcp.M113.031351
PMID:24478445
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3977193/
Abstract

Cone snails are highly successful marine predators that use complex venoms to capture prey. At any given time, hundreds of toxins (conotoxins) are synthesized in the secretory epithelial cells of the venom gland, a long and convoluted organ that can measure 4 times the length of the snail's body. In recent years a number of studies have begun to unveil the transcriptomic, proteomic and peptidomic complexity of the venom and venom glands of a number of cone snail species. By using a combination of DIGE, bottom-up proteomics and next-generation transcriptome sequencing the present study identifies proteins involved in envenomation and conotoxin maturation, significantly extending the repertoire of known (poly)peptides expressed in the venom gland of these remarkable animals. We interrogate the molecular and proteomic composition of different sections of the venom glands of 3 specimens of the fish hunter Conus geographus and demonstrate regional variations in gene expression and protein abundance. DIGE analysis identified 1204 gel spots of which 157 showed significant regional differences in abundance as determined by biological variation analysis. Proteomic interrogation identified 342 unique proteins including those that exhibited greatest fold change. The majority of these proteins also exhibited significant changes in their mRNA expression levels validating the reliability of the experimental approach. Transcriptome sequencing further revealed a yet unknown genetic diversity of several venom gland components. Interestingly, abundant proteins that potentially form part of the injected venom mixture, such as echotoxins, phospholipase A2 and con-ikots-ikots, classified into distinct expression clusters with expression peaking in different parts of the gland. Our findings significantly enhance the known repertoire of venom gland polypeptides and provide molecular and biochemical evidence for the compartmentalization of this organ into distinct functional entities.

摘要

芋螺是非常成功的海洋捕食者,它们利用复杂的毒液来捕获猎物。在任何给定时间,毒液腺(一个长而盘绕的器官,长度可达蜗牛身体的4倍)的分泌上皮细胞中会合成数百种毒素(芋螺毒素)。近年来,一些研究已开始揭示多种芋螺物种的毒液和毒液腺在转录组学、蛋白质组学和肽组学方面的复杂性。通过结合使用差异凝胶电泳(DIGE)、自下而上蛋白质组学和新一代转录组测序,本研究确定了参与毒液注入和芋螺毒素成熟的蛋白质,显著扩展了这些非凡动物毒液腺中已知(多)肽的种类。我们研究了3个鱼类捕食者地纹芋螺标本毒液腺不同部位的分子和蛋白质组成,并证明了基因表达和蛋白质丰度的区域差异。DIGE分析确定了1204个凝胶点,其中157个在通过生物学变异分析确定的丰度上显示出显著的区域差异。蛋白质组学研究确定了342种独特蛋白质,包括那些具有最大倍数变化的蛋白质。这些蛋白质中的大多数在mRNA表达水平上也表现出显著变化,验证了实验方法的可靠性。转录组测序进一步揭示了几种毒液腺成分未知的遗传多样性。有趣的是,可能构成注入毒液混合物一部分的丰富蛋白质,如echotoxins、磷脂酶A2和芋螺防御肽,被分类到不同的表达簇中,其表达在腺体的不同部位达到峰值。我们的研究结果显著增加了毒液腺多肽的已知种类,并为该器官划分为不同功能实体提供了分子和生化证据。