罗姆斯氏菌属的新种——罗姆斯氏菌 ilealis 种的特性,该菌从大鼠的胃肠道中分离得到,以及将 5 个密切相关的梭菌属成员重新分类到罗姆斯氏菌属、肠杆菌属、栖土杆菌属和无淀粉拟杆菌属中的建议。

Characterization of Romboutsia ilealis gen. nov., sp. nov., isolated from the gastro-intestinal tract of a rat, and proposal for the reclassification of five closely related members of the genus Clostridium into the genera Romboutsia gen. nov., Intestinibacter gen. nov., Terrisporobacter gen. nov. and Asaccharospora gen. nov.

机构信息

Winclove Probiotics, Hulstweg 11, 1032 LB Amsterdam, The Netherlands.

Laboratory of Microbiology, Wageningen University, Dreijenplein 10, 6703 HB Wageningen, The Netherlands.

出版信息

Int J Syst Evol Microbiol. 2014 May;64(Pt 5):1600-1616. doi: 10.1099/ijs.0.059543-0. Epub 2014 Jan 30.

Abstract

A Gram-positive staining, rod-shaped, non-motile, spore-forming obligately anaerobic bacterium, designated CRIBT, was isolated from the gastro-intestinal tract of a rat and characterized. The major cellular fatty acids of strain CRIBT were saturated and unsaturated straight-chain C12-C19 fatty acids, with C16:0 being the predominant fatty acid. The polar lipid profile comprised six glycolipids, four phospholipids and one lipid that did not stain with any of the specific spray reagents used. The only quinone was MK-6. The predominating cell-wall sugars were glucose and galactose. The peptidoglycan type of strain CRIBT was A1σ lanthionine-direct. The genomic DNA G+C content of strain CRIBT was 28.1 mol%. On the basis of 16S rRNA gene sequence similarity, strain CRIBT was most closely related to a number of species of the genus Clostridium, including Clostridium lituseburense (97.2%), Clostridium glycolicum (96.2%), Clostridium mayombei (96.2%), Clostridium bartlettii (96.0%) and Clostridium irregulare (95.5%). All these species show very low 16S rRNA gene sequence similarity (<85%) to the type strain of Clostridium butyricum, the type species of the genus Clostridium. DNA-DNA hybridization with closely related reference strains indicated reassociation values below 32%. On the basis of phenotypic and genetic studies, a novel genus, Romboutsia gen. nov., is proposed. The novel isolate CRIBT (=DSM 25109T=NIZO 4048T) is proposed as the type strain of the type species, Romboutsia ilealis gen. nov., sp. nov., of the proposed novel genus. It is proposed that C. lituseburense is transferred to this genus as Romboutsia lituseburensis comb. nov. Furthermore, the reclassification into novel genera is proposed for C. bartlettii, as Intestinibacter bartlettii gen. nov., comb. nov. (type species of the genus), C. glycolicum, as Terrisporobacter glycolicus gen. nov., comb. nov. (type species of the genus), C. mayombei, as Terrisporobacter mayombei gen. nov., comb. nov., and C. irregulare, as Asaccharospora irregularis gen. nov., comb. nov. (type species of the genus), on the basis of additional data collected in this study. In addition, an emendation of the species Peptostreptococcus anaerobius and the order Eubacteriales is provided.

摘要

一株革兰氏阳性、杆状、非运动、产芽孢的严格厌氧菌CRIBT 从大鼠的胃肠道中分离出来,并进行了鉴定。CRIBT 菌株的主要细胞脂肪酸为饱和和不饱和直链 C12-C19 脂肪酸,其中 C16:0 是主要脂肪酸。极性脂谱由六种糖脂、四种磷脂和一种用任何特定喷雾试剂都不能染色的脂组成。唯一的醌是 MK-6。主要的细胞壁糖是葡萄糖和半乳糖。CRIBT 菌株的肽聚糖类型为 A1σ 赖氨酸直接。CRIBT 菌株的基因组 DNA G+C 含量为 28.1mol%。根据 16S rRNA 基因序列相似性,CRIBT 菌株与许多梭菌属的种最为密切相关,包括 lituseburense 梭菌(97.2%)、glycolicum 梭菌(96.2%)、mayombei 梭菌(96.2%)、bartlettii 梭菌(96.0%)和 irregularis 梭菌(95.5%)。所有这些种与梭菌属的丁酸梭菌(Clostridium butyricum)的模式种的 16S rRNA 基因序列相似性非常低(<85%)。与密切相关的参考株进行 DNA-DNA 杂交表明再结合值低于 32%。基于表型和遗传研究,提出了一个新的属,Romboutsia 属。新分离株 CRIBT(=DSM 25109T=NIZO 4048T)被提议为新属的模式种,即 ilealis 梭菌,sp. nov.。建议将 lituseburense 梭菌转移到这个属中,作为 Romboutsia lituseburensis comb. nov.。此外,由于本研究中收集的额外数据,建议将 bartlettii 梭菌重新分类为 bartlettii 肠杆菌科,gen. nov.,comb. nov.(属),glycolicum 梭菌,作为 Terrisporobacter glycolicus gen. nov.,comb. nov.(属),mayombei 梭菌,作为 Terrisporobacter mayombei gen. nov.,comb. nov.,以及 irregularis 梭菌,作为 Asaccharospora irregularis gen. nov.,comb. nov.(属)。此外,对厌氧消化链球菌和真细菌目进行了修正。

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