Jayapalan Saranya, Natarajan Jeyakumar
Data Mining and Text Mining Laboratory, Department of Bioinformatics, Bharathiar University, Coimbatore-641046, India.
Bioinformation. 2013 Dec 27;9(20):1023-30. doi: 10.6026/97320630091023. eCollection 2013.
Alzheimer's disease is the most common form of dementia. Abnormal hyperphosphorylation of Microtubule associated protein tau (MAPT) is one of the hallmarks of Alzheimer's disease and related tau pathies. CDK5 and GSK3B are the two main protein kinases that have an important role in the abnormal hyperphosphorylation of MAPT which leads to Alzheimer's disease. Structural information for both MAPT-CDK5 and MAPT-GSK3B complexes being absent, we resorted to molecular modeling for gaining insight into the mechanism of implication of hyperphosphorylation of MAPT by both enzymes. First the tertiary structure of MAPT was modeled and its active regions were defined. This was followed by molecular docking and interaction studies of MAPT with CDK5 and GSK3B kinases to infer the role of these kinases in abnormal hyperphosphorylation of MAPT protein. In addition, we have investigated the characteristic features such as phosphorylation sites and ATP binding sites of MAPT and two kinases. Further we computed the stabilization centers and stabilization residues of the MAPT protein and two kinases before and after docking process. The overall results portray that CDK5 is strongly involved in the hyperphosphorylation of MAPT when compared to GSK3B.
阿尔茨海默病是最常见的痴呆形式。微管相关蛋白tau(MAPT)的异常过度磷酸化是阿尔茨海默病及相关tau蛋白病的标志之一。细胞周期蛋白依赖性激酶5(CDK5)和糖原合成酶激酶3β(GSK3B)是在导致阿尔茨海默病的MAPT异常过度磷酸化中起重要作用的两种主要蛋白激酶。由于缺乏MAPT - CDK5和MAPT - GSK3B复合物的结构信息,我们借助分子建模来深入了解这两种酶对MAPT过度磷酸化的作用机制。首先对MAPT的三级结构进行建模并确定其活性区域。随后进行MAPT与CDK5和GSK3B激酶的分子对接和相互作用研究,以推断这些激酶在MAPT蛋白异常过度磷酸化中的作用。此外,我们研究了MAPT以及这两种激酶的磷酸化位点和ATP结合位点等特征。进一步地,我们计算了对接过程前后MAPT蛋白和两种激酶的稳定中心和稳定残基。总体结果表明,与GSK3B相比,CDK5在MAPT的过度磷酸化中起更重要的作用。