Palaniappan Krishna, Meier-Kolthoff Jan P, Teshima Hazuki, Nolan Matt, Lapidus Alla, Tice Hope, Del Rio Tijana Glavina, Cheng Jan-Fang, Han Cliff, Tapia Roxanne, Goodwin Lynne A, Pitluck Sam, Liolios Konstantinos, Mavromatis Konstantinos, Pagani Ioanna, Ivanova Natalia, Mikhailova Natalia, Pati Amrita, Chen Amy, Rohde Manfred, Mayilraj Shanmugam, Spring Stefan, Detter John C, Göker Markus, Bristow James, Eisen Jonathan A, Markowitz Victor, Hugenholtz Philip, Kyrpides Nikos C, Klenk Hans-Peter, Woyke Tanja
DOE Joint Genome Institute, Walnut Creek, California, USA.
Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.
Stand Genomic Sci. 2013 Oct 2;9(1):57-70. doi: 10.4056/sigs.4237901. eCollection 2013 Oct 16.
Thermanaerovibrio velox Zavarzina et al. 2000 is a member of the Synergistaceae, a family in the phylum Synergistetes that is already well-characterized at the genome level. Members of this phylum were described as Gram-negative staining anaerobic bacteria with a rod/vibrioid cell shape and possessing an atypical outer cell envelope. They inhabit a large variety of anaerobic environments including soil, oil wells, wastewater treatment plants and animal gastrointestinal tracts. They are also found to be linked to sites of human diseases such as cysts, abscesses, and areas of periodontal disease. The moderately thermophilic and organotrophic T. velox shares most of its morphologic and physiologic features with the closely related species, T. acidaminovorans. In addition to Su883(T), the type strain of T. acidaminovorans, stain Z-9701(T) is the second type strain in the genus Thermanaerovibrio to have its genome sequence published. Here we describe the features of this organism, together with the non-contiguous genome sequence and annotation. The 1,880,838 bp long chromosome (non-contiguous finished sequence) with its 1,751 protein-coding and 59 RNA genes is a part of the G enomic E ncyclopedia of Bacteria and Archaea project.
速生热厌氧弧菌(Thermanaerovibrio velox)Zavarzina等人于2000年发现,它是协同菌科(Synergistaceae)的成员,协同菌科属于协同菌门(Synergistetes),该门在基因组水平上已得到充分表征。该门成员被描述为革兰氏阴性厌氧细菌,细胞呈杆状/弧状,具有非典型的外细胞膜。它们栖息于多种厌氧环境,包括土壤、油井、污水处理厂和动物胃肠道。还发现它们与人类疾病部位有关,如囊肿、脓肿和牙周病区域。嗜热兼有机营养型的速生热厌氧弧菌与其近缘种嗜氨基酸热厌氧弧菌(T. acidaminovorans)具有大部分形态和生理特征。除嗜氨基酸热厌氧弧菌的模式菌株Su883(T)外,菌株Z-9701(T)是热厌氧弧菌属中第二个公布基因组序列的模式菌株。在此,我们描述该微生物的特征,以及非连续基因组序列和注释。这个1,880,838 bp长的染色体(非连续完成序列)及其1,751个蛋白质编码基因和59个RNA基因是细菌和古菌基因组百科全书项目的一部分。