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非酶合成固氮酶 MoFe 蛋白中的 P 簇:所有二价铁[Fe4S4](0)中间产物参与的证据。

Nonenzymatic synthesis of the P-cluster in the nitrogenase MoFe protein: evidence of the involvement of all-ferrous [Fe4S4](0) intermediates.

机构信息

Department of Chemistry, Louisiana State University , Baton Rouge, Louisiana 70808, United States.

出版信息

Biochemistry. 2014 Feb 25;53(7):1108-16. doi: 10.1021/bi401699u. Epub 2014 Feb 12.

Abstract

The P-cluster in the nitrogenase MoFe protein is a [Fe8S7] cluster and represents the most complex FeS cluster found in Nature. To date, the exact mechanism of the in vivo synthesis of the P-cluster remains unclear. What is known is that the precursor to the P-cluster is a pair of neighboring [Fe4S4]-like clusters found on the ΔnifH MoFe protein, a protein expressed in the absence of the nitrogenase Fe protein (NifH). Moreover, incubation of the ΔnifH MoFe protein with NifH and MgATP results in the synthesis of the MoFe protein P-clusters. To improve our understanding of the mechanism of this reaction, we conducted a magnetic circular dichroism (MCD) spectroscopic study of the [Fe4S4]-like clusters on the ΔnifH MoFe protein. Reducing the ΔnifH MoFe protein with Ti(III) citrate results in the quenching of the S = (1)/2 electron paramagnetic resonance signal associated with the Fe4S4 state of the clusters. MCD spectroscopy reveals this reduction results in all four 4Fe clusters being converted into the unusual, all-ferrous Fe4S4 state. Subsequent increases of the redox potential generate new clusters. Most significantly, one of these newly formed clusters is the P-cluster, which represents approximately 20-25% of the converted Fe concentration. The other two clusters are an X cluster, of unknown structure, and a classic [Fe4S4] cluster, which represents approximately 30-35% of the Fe concentration. Diamagnetic FeS clusters may also have been generated but, because of their low spectral intensity, would not have been identified. These results demonstrate that the nitrogenase P-cluster can be generated in the absence of NifH and MgATP.

摘要

固氮酶 MoFe 蛋白中的 P 簇是一个 [Fe8S7] 簇,代表了自然界中发现的最复杂的 FeS 簇。迄今为止,P 簇在体内的合成的确切机制仍不清楚。已知的是,P 簇的前体是在 ΔnifH MoFe 蛋白上发现的一对相邻的 [Fe4S4] 样簇,该蛋白在缺乏氮酶 Fe 蛋白(NifH)的情况下表达。此外,将 ΔnifH MoFe 蛋白与 NifH 和 MgATP 孵育会导致 MoFe 蛋白 P 簇的合成。为了提高我们对该反应机制的理解,我们对 ΔnifH MoFe 蛋白上的 [Fe4S4] 样簇进行了磁圆二色(MCD)光谱研究。用 Ti(III) 柠檬酸盐还原 ΔnifH MoFe 蛋白会导致与簇的 Fe4S4 态相关的 S = (1)/2 电子顺磁共振信号猝灭。MCD 光谱表明,这种还原导致所有四个 4Fe 簇都转化为不寻常的全二价 Fe4S4 态。随后增加氧化还原电势会产生新的簇。最重要的是,其中一个新形成的簇是 P 簇,约占转化铁浓度的 20-25%。另外两个簇是一个未知结构的 X 簇和一个经典的 [Fe4S4] 簇,约占铁浓度的 30-35%。也可能生成了抗磁性的 FeS 簇,但由于其光谱强度较低,无法识别。这些结果表明,氮酶 P 簇可以在没有 NifH 和 MgATP 的情况下生成。

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