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微阵列杂交检测和 DNA 基因分型。

Electronic hybridization detection in microarray format and DNA genotyping.

机构信息

Laboratoire Nanobiophysique ESPCI ParisTech, CNRS UMR Gulliver 7083 10 rue Vauquelin, 75005 Paris, France.

出版信息

Sci Rep. 2014 Feb 26;4:4194. doi: 10.1038/srep04194.

DOI:10.1038/srep04194
PMID:24569823
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3935197/
Abstract

We describe an approach to substituting a fluorescence microarray with a surface made of an arrangement of electrolyte-gated field effect transistors. This was achieved using a dedicated blocking of non-specific interactions and comparing threshold voltage shifts of transistors exhibiting probe molecules of different base sequence. We apply the approach to detection of the 35delG mutation, which is related to non-syndromic deafness and is one of the most frequent mutations in humans. The process involves barcode sequences that are generated by Tas-PCR, a newly developed replication reaction using polymerase blocking. The barcodes are recognized by hybridization to surface attached probes and are directly detected by the semiconductor device.

摘要

我们描述了一种用由电解质门控场效应晶体管排列组成的表面替代荧光微阵列的方法。这是通过专门阻止非特异性相互作用并比较具有不同碱基序列的探针分子的晶体管的阈值电压变化来实现的。我们将该方法应用于检测与非综合征性耳聋相关的 35delG 突变,这是人类最常见的突变之一。该过程涉及 Tas-PCR 生成的条形码序列,Tas-PCR 是一种使用聚合酶阻断的新开发的复制反应。条形码通过与表面附着的探针杂交被识别,并被半导体器件直接检测。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dd44/3935197/148613e7ea21/srep04194-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dd44/3935197/f02a8d1eb234/srep04194-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dd44/3935197/aa3573822a17/srep04194-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dd44/3935197/c5a1a0853204/srep04194-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dd44/3935197/148613e7ea21/srep04194-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dd44/3935197/f02a8d1eb234/srep04194-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dd44/3935197/aa3573822a17/srep04194-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dd44/3935197/c5a1a0853204/srep04194-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dd44/3935197/148613e7ea21/srep04194-f4.jpg

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本文引用的文献

1
An integrated semiconductor device enabling non-optical genome sequencing.一种用于非光学基因组测序的集成半导体设备。
Nature. 2011 Jul 20;475(7356):348-52. doi: 10.1038/nature10242.
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Label-free single-molecule detection of DNA-hybridization kinetics with a carbon nanotube field-effect transistor.基于碳纳米管场效应晶体管的无标记单分子 DNA 杂交动力学检测。
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Signal enhancement in electronic detection of DNA hybridization.DNA杂交电子检测中的信号增强
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Potentiometric Detection of Single Nucleotide Polymorphism by Using a Genetic Field-effect transistor.利用基因场效应晶体管对单核苷酸多态性进行电位检测。
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Highly multiplexed molecular inversion probe genotyping: over 10,000 targeted SNPs genotyped in a single tube assay.高度多重分子倒置探针基因分型:在单管检测中对超过10,000个靶向单核苷酸多态性进行基因分型。
Genome Res. 2005 Feb;15(2):269-75. doi: 10.1101/gr.3185605.
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Biosens Bioelectron. 2004 Jul 15;19(12):1723-31. doi: 10.1016/j.bios.2004.01.019.
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Effects of atmospheric ozone on microarray data quality.大气臭氧对微阵列数据质量的影响。
Anal Chem. 2003 Sep 1;75(17):4672-5. doi: 10.1021/ac034241b.
10
Improved detection of differentially expressed genes in microarray experiments through multiple scanning and image integration.通过多次扫描和图像整合提高微阵列实验中差异表达基因的检测
Nucleic Acids Res. 2003 Dec 1;31(23):e149. doi: 10.1093/nar/gng149.