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结构动力学在无规卷曲蛋白质复合物中的补偿性适应。

Compensatory adaptations of structural dynamics in an intrinsically disordered protein complex.

机构信息

Department of Structural and Computational Biology, Max F. Perutz Laboratories, Vienna Biocenter Campus 5, 1030 Vienna (Austria).

出版信息

Angew Chem Int Ed Engl. 2014 Apr 7;53(15):3840-3. doi: 10.1002/anie.201308389. Epub 2014 Mar 6.

Abstract

Intrinsically disordered proteins (IDPs) play crucial roles in protein interaction networks and in this context frequently constitute important hubs and interfaces. Here we show by a combination of NMR and EPR spectroscopy that the binding of the cytokine osteopontin (OPN) to its natural ligand, heparin, is accompanied by thermodynamically compensating structural adaptations. The core segment of OPN expands upon binding. This "unfolding-upon-binding" is governed primarily through electrostatic interactions between heparin and charged patches along the protein backbone and compensates for entropic penalties due to heparin-OPN binding. It is shown how structural unfolding compensates for entropic losses through ligand binding in IDPs and elucidates the interplay between structure and thermodynamics of rapid substrate-binding and -release events in IDP interaction networks.

摘要

无规则蛋白质(IDPs)在蛋白质相互作用网络中起着至关重要的作用,并且在这种情况下经常构成重要的枢纽和界面。在这里,我们通过 NMR 和 EPR 光谱学的组合表明,细胞因子骨桥蛋白(OPN)与其天然配体肝素的结合伴随着热力学补偿的结构适应。OPN 的核心片段在结合后展开。这种“结合时的展开”主要通过肝素和沿蛋白质主链的带电补丁之间的静电相互作用来控制,并补偿由于肝素-OPN 结合而导致的熵罚。本文展示了结构展开如何通过 IDP 中的配体结合来补偿熵损失,并阐明了 IDP 相互作用网络中快速底物结合和释放事件的结构和热力学之间的相互作用。

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