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氨基共生菌(候选门OP8)的丰度、多样性和群落结构的全球模式。

Global patterns of abundance, diversity and community structure of the Aminicenantes (candidate phylum OP8).

作者信息

Farag Ibrahim F, Davis James P, Youssef Noha H, Elshahed Mostafa S

机构信息

Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, Oklahoma, United States of America.

出版信息

PLoS One. 2014 Mar 17;9(3):e92139. doi: 10.1371/journal.pone.0092139. eCollection 2014.

Abstract

We investigated the global patterns of abundance, diversity, and community structure of members of the Aminicenantes (candidate phylum OP8). Our aim was to identify the putative ecological role(s) played by members of this poorly characterized bacterial lineages in various ecosystems. Analysis of near full-length 16S rRNA genes identified four classes and eight orders within the Aminicenantes. Within 3,134 datasets comprising ∼1.8 billion high throughput-generated partial 16S rRNA genes, 47,351 Aminicenantes-affiliated sequences were identified in 913 datasets. The Aminicenantes exhibited the highest relative abundance in hydrocarbon-impacted environments, followed by marine habitats (especially hydrothermal vents and coral-associated microbiome samples), and aquatic, non-marine habitats (especially in terrestrial springs and groundwater samples). While the overall abundance of the Aminicenantes was higher in low oxygen tension as well as non-saline and low salinity habitats, it was encountered in a wide range of oxygen tension, salinities, and temperatures. Analysis of the community structure of the Aminicenantes showed distinct patterns across various datasets that appear to be, mostly, driven by habitat variations rather than prevalent environmental parameters. We argue that the detection of the Aminicenantes across environmental extremes and the observed distinct community structure patterns reflect a high level of intraphylum metabolic diversity and adaptive capabilities that enable its survival and growth in a wide range of habitats and environmental conditions.

摘要

我们研究了氨基菌门(候选门OP8)成员的丰度、多样性和群落结构的全球模式。我们的目的是确定这个特征描述较少的细菌谱系成员在各种生态系统中所发挥的假定生态作用。对近全长16S rRNA基因的分析确定了氨基菌门内的四个纲和八个目。在包含约18亿个高通量生成的部分16S rRNA基因的3134个数据集中,在913个数据集中鉴定出了47351个与氨基菌门相关的序列。氨基菌门在受烃类影响的环境中相对丰度最高,其次是海洋栖息地(特别是热液喷口和与珊瑚相关的微生物组样本)以及水生非海洋栖息地(特别是陆地泉水和地下水样本)。虽然氨基菌门在低氧张力以及非盐和低盐度栖息地中的总体丰度较高,但在广泛的氧张力、盐度和温度范围内都能发现它。对氨基菌门群落结构的分析表明,不同数据集呈现出明显的模式,这些模式似乎主要由栖息地变化而非普遍的环境参数驱动。我们认为,在各种极端环境中检测到氨基菌门以及观察到的不同群落结构模式反映了该门内高水平的代谢多样性和适应能力,使其能够在广泛多样的栖息地和环境条件下生存和生长。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0cfd/3956909/b99169f31ef9/pone.0092139.g001.jpg

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