Fanucchi Stephanie, Shibayama Youtaro, Mhlanga Musa M
Gene Expression and Biophysics Group; Synthetic Biology Emerging Research Area; Biosciences Unit; Council for Scientific and Industrial Research; Pretoria, South Africa.
Gene Expression and Biophysics Group; Synthetic Biology Emerging Research Area; Biosciences Unit; Council for Scientific and Industrial Research; Pretoria, South Africa; Unidade de Biofísica e Expressão Genética; Instituto de Medicina Molecular; Faculdade de Medicina; Universidade de Lisboa; Lisboa, Portugal.
Nucleus. 2014 Mar-Apr;5(2):103-12. doi: 10.4161/nucl.28352. Epub 2014 Feb 25.
Chromatin loops are pervasive and permit the tight compaction of DNA within the confined space of the nucleus. Looping enables distal genes and DNA elements to engage in chromosomal contact, to form multigene complexes. Advances in biochemical and imaging techniques reveal that loop-mediated contact is strongly correlated with transcription of interacting DNA. However, these approaches only provide a snapshot of events and therefore are unable to reveal the dynamics of multigene complex assembly. This highlights the necessity to develop single cell-based assays that provide single molecule resolution, and are able to functionally interrogate the role of chromosomal contact on gene regulation. To this end, high-resolution single cell imaging regimes, combined with genome editing approaches, are proving to be pivotal to advancing our understanding of loop-mediated dynamics.
染色质环普遍存在,能使DNA在细胞核的有限空间内紧密压缩。环化作用使远端基因和DNA元件能够进行染色体接触,形成多基因复合体。生化和成像技术的进展表明,环介导的接触与相互作用DNA的转录密切相关。然而,这些方法仅提供事件的一个快照,因此无法揭示多基因复合体组装的动态过程。这凸显了开发基于单细胞的检测方法的必要性,这些方法应能提供单分子分辨率,并能从功能上探究染色体接触对基因调控的作用。为此,高分辨率单细胞成像技术与基因组编辑方法相结合,对于增进我们对环介导动态过程的理解至关重要。