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病毒基因组长度与病毒体体积之间的异速关系。

An allometric relationship between the genome length and virion volume of viruses.

机构信息

Marie Bashir Institute for Infectious Diseases and Biosecurity, Charles Perkins Centre, School of Biological Sciences, and Sydney Medical School, The University of Sydney, Sydney, New South Wales, Australia.

出版信息

J Virol. 2014 Jun;88(11):6403-10. doi: 10.1128/JVI.00362-14. Epub 2014 Mar 26.

Abstract

UNLABELLED

Virions vary in size by at least 4 orders of magnitude, yet the evolutionary forces responsible for this enormous diversity are unknown. We document a significant allometric relationship, with an exponent of approximately 1.5, between the genome length and virion volume of viruses and find that this relationship is not due to geometric constraints. Notably, this allometric relationship holds regardless of genomic nucleic acid, genome structure, or type of virion architecture and therefore represents a powerful scaling law. In contrast, no such relationship is observed at the scale of individual genes. Similarly, after adjusting for genome length, no association is observed between virion volume and the number of proteins, ruling out protein number as the explanation for the relationship between genome and virion sizes. Such a fundamental allometric relationship not only sheds light on the constraints to virus evolution, in that increases in virion size but not necessarily structure are associated with concomitant increases in genome size, but also implies that virion sizes in nature can be broadly predicted from genome sequence data alone.

IMPORTANCE

Viruses vary dramatically in both genome and virion sizes, but the factors responsible for this diversity are uncertain. Through a comparative and quantitative investigation of these two fundamental biological parameters across diverse viral taxa, we show that genome length and virion volume conform to a simple allometric scaling law. Notably, this allometric relationship holds regardless of the type of virus, including those with both RNA and DNA genomes, and encompasses viruses that exhibit more than 3 logs of genome size variation. Accordingly, this study helps to reveal the basic rules of virus design.

摘要

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病毒的大小差异至少有 4 个数量级,但导致这种巨大多样性的进化力量尚不清楚。我们记录了病毒基因组长度和病毒体体积之间存在显著的比例关系,其指数约为 1.5,并且发现这种关系不是由于几何约束造成的。值得注意的是,这种比例关系无论基因组的核酸、基因组结构或病毒体结构类型如何都成立,因此代表了一种强大的比例定律。相比之下,在单个基因的尺度上,不存在这种关系。同样,在调整基因组长度后,病毒体体积与蛋白质数量之间没有关联,从而排除了蛋白质数量是解释基因组和病毒体大小之间关系的原因。这种基本的比例关系不仅揭示了病毒进化的限制,即病毒体大小的增加,但不一定是结构的增加,与基因组大小的相应增加有关,而且意味着自然界中病毒体的大小可以仅从基因组序列数据就可以进行广泛预测。

重要性

病毒在基因组和病毒体大小上差异很大,但导致这种多样性的因素尚不确定。通过对不同病毒类群的这两个基本生物学参数进行比较和定量研究,我们表明基因组长度和病毒体体积符合简单的比例定律。值得注意的是,这种比例关系无论病毒的类型如何,包括具有 RNA 和 DNA 基因组的病毒,以及涵盖基因组大小变化超过 3 个对数的病毒都成立。因此,这项研究有助于揭示病毒设计的基本规则。

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