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在电子病历和大规模基因组学联盟工作背景下的拷贝数变异分析。

Copy number variation analysis in the context of electronic medical records and large-scale genomics consortium efforts.

作者信息

Connolly John J, Glessner Joseph T, Almoguera Berta, Crosslin David R, Jarvik Gail P, Sleiman Patrick M, Hakonarson Hakon

机构信息

The Center for Applied Genomics, Children's Hospital of Philadelphia Philadelphia, PA, USA.

The Center for Applied Genomics, Children's Hospital of Philadelphia Philadelphia, PA, USA ; Department of Pediatrics, University of Pennsylvania Perelman School of Medicine Philadelphia, PA, USA.

出版信息

Front Genet. 2014 Mar 18;5:51. doi: 10.3389/fgene.2014.00051. eCollection 2014.

DOI:10.3389/fgene.2014.00051
PMID:24672537
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3957100/
Abstract

The goal of this paper is to review recent research on copy number variations (CNVs) and their association with complex and rare diseases. In the latter part of this paper, we focus on how large biorepositories such as the electronic medical record and genomics (eMERGE) consortium may be best leveraged to systematically mine for potentially pathogenic CNVs, and we end with a discussion of how such variants might be reported back for inclusion in electronic medical records as part of medical history.

摘要

本文的目标是回顾近期关于拷贝数变异(CNV)及其与复杂疾病和罕见疾病关联的研究。在本文的后半部分,我们将重点关注如何最好地利用大型生物样本库,如电子病历与基因组学(eMERGE)联盟,来系统地挖掘潜在的致病性CNV,最后我们将讨论如何将这些变异作为病史的一部分反馈报告并纳入电子病历中。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e3bc/3957100/6a0e1d4ab314/fgene-05-00051-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e3bc/3957100/30771dbced86/fgene-05-00051-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e3bc/3957100/6a0e1d4ab314/fgene-05-00051-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e3bc/3957100/30771dbced86/fgene-05-00051-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e3bc/3957100/6a0e1d4ab314/fgene-05-00051-g002.jpg

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本文引用的文献

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PLoS One. 2013 Aug 13;8(8):e71802. doi: 10.1371/journal.pone.0071802. eCollection 2013.
2
Pathogenic or not? Assessing the clinical relevance of copy number variants.致病性与否?评估拷贝数变异的临床相关性。
Clin Genet. 2013 Nov;84(5):415-21. doi: 10.1111/cge.12242. Epub 2013 Aug 21.
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ACMG recommendations for reporting of incidental findings in clinical exome and genome sequencing.
Genet Med. 2019 Sep;21(9):2135-2144. doi: 10.1038/s41436-019-0475-4. Epub 2019 Mar 20.
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Cytogenomic assessment of the diagnosis of 93 patients with developmental delay and multiple congenital abnormalities: The Brazilian experience.93 例发育迟缓伴多发先天畸形患者的细胞遗传学诊断评估:巴西经验。
Clinics (Sao Paulo). 2017 Oct;72(9):526-537. doi: 10.6061/clinics/2017(09)02.
5
The clinical impact of copy number variants in inherited bone marrow failure syndromes.拷贝数变异在遗传性骨髓衰竭综合征中的临床影响。
NPJ Genom Med. 2017 May 10;2. doi: 10.1038/s41525-017-0019-2.
6
BIOFILTER AS A FUNCTIONAL ANNOTATION PIPELINE FOR COMMON AND RARE COPY NUMBER BURDEN.生物过滤器作为常见和罕见拷贝数负担的功能注释管道。
Pac Symp Biocomput. 2016;21:357-68.
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The foundation of precision medicine: integration of electronic health records with genomics through basic, clinical, and translational research.精准医学的基础:通过基础、临床和转化研究将电子健康记录与基因组学相结合。
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Front Genet. 2014 Jun 17;5:184. doi: 10.3389/fgene.2014.00184. eCollection 2014.
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