Ball Lindsay G, Xu Xin, Blackwell Susan, Hanna Michelle D, Lambrecht Amanda D, Xiao Wei
Department of Microbiology and Immunology, University of Saskatchewan, Saskatoon, SK, Canada.
College of Life Sciences, Capital Normal University, Beijing 100048, China.
DNA Repair (Amst). 2014 Apr;16:74-83. doi: 10.1016/j.dnarep.2014.02.016. Epub 2014 Mar 13.
DNA post-replication repair (PRR) functions to bypass replication-blocking lesions and is subdivided into two parallel pathways: error-prone translesion DNA synthesis and error-free PRR. While both pathways are dependent on the ubiquitination of PCNA, error-free PRR utilizes noncanonical K63-linked polyubiquitinated PCNA to signal lesion bypass through template switch, a process thought to be dependent on Mms2-Ubc13 and a RING finger motif of the Rad5 ubiquitin ligase. Previous in vitro studies demonstrated the ability of Rad5 to promote replication fork regression, a function dependent on its helicase activity. To investigate the genetic and mechanistic relationship between fork regression in vitro and template switch in vivo, we created and characterized site-specific mutations defective in the Rad5 RING or helicase activity. Our results indicate that both the Rad5 ubiquitin ligase and the helicase activities are exclusively involved in the same error-free PRR pathway. Surprisingly, the Rad5 helicase mutation abolishes its physical interaction with Ubc13 and the K63-linked PCNA polyubiquitin chain assembly. Indeed, physical fusions of Rad5 with Ubc13 bypass the requirement for either the helicase or the RING finger domain. Since the helicase domain overlaps with the SWI/SNF chromatin-remodelling domain, our findings suggest a structural role of this domain and that the Rad5 helicase activity is dispensable for error-free lesion bypass.
DNA复制后修复(PRR)的功能是绕过复制阻断性损伤,并分为两条平行途径:易出错的跨损伤DNA合成和无差错PRR。虽然这两条途径都依赖于PCNA的泛素化,但无差错PRR利用非经典的K63连接的多聚泛素化PCNA来通过模板转换发出损伤绕过信号,这一过程被认为依赖于Mms2-Ubc13和Rad5泛素连接酶的一个环状结构域基序。先前的体外研究证明了Rad5促进复制叉倒退的能力,这一功能依赖于其解旋酶活性。为了研究体外复制叉倒退与体内模板转换之间的遗传和机制关系,我们创建并鉴定了Rad5环状结构域或解旋酶活性缺陷的位点特异性突变。我们的结果表明,Rad5泛素连接酶和解旋酶活性都专门参与同一条无差错PRR途径。令人惊讶的是,Rad5解旋酶突变消除了其与Ubc13以及K63连接的PCNA多聚泛素链组装的物理相互作用。事实上,Rad5与Ubc13的物理融合绕过了对解旋酶或环状结构域的需求。由于解旋酶结构域与SWI/SNF染色质重塑结构域重叠,我们的发现表明了该结构域的结构作用,并且Rad5解旋酶活性对于无差错损伤绕过是可有可无的。