章鱼碱型根癌土壤杆菌菌株Ach5的基因组序列
Genome Sequence of the Octopine-Type Agrobacterium tumefaciens Strain Ach5.
作者信息
Henkel Christiaan V, den Dulk-Ras Amke, Zhang Xiaorong, Hooykaas Paul J J
机构信息
Department of Molecular and Developmental Genetics, Institute of Biology, Leiden University, Leiden, The Netherlands.
出版信息
Genome Announc. 2014 Mar 27;2(2):e00225-14. doi: 10.1128/genomeA.00225-14.
Abstract
We have sequenced the complete genome of the plant pathogen Agrobacterium tumefaciens strain LBA4213, a derivative of the wild-type strain A. tumefaciens Ach5 and the ancestor of A. tumefaciens strain LBA4404 used in genetic engineering. The genome consists of a circular chromosome and a linear chromosome, as well as a megaplasmid and a tumor-inducing plasmid.
摘要
我们已经对植物病原体根癌农杆菌菌株LBA4213的全基因组进行了测序，该菌株是野生型菌株根癌农杆菌Ach5的衍生物，也是基因工程中使用的根癌农杆菌菌株LBA4404的祖先。该基因组由一条环状染色体、一条线性染色体、一个大质粒和一个致瘤质粒组成。
相似文献
1
Genome Sequence of the Octopine-Type Agrobacterium tumefaciens Strain Ach5.
Genome Announc. 2014 Mar 27;2(2):e00225-14. doi: 10.1128/genomeA.00225-14.
2
Characterization of a new Agrobacterium tumefaciens strain from alfalfa.
Arch Microbiol. 1998 May;169(5):381-6. doi: 10.1007/s002030050586.
3
Complete Genome Sequence of Agrobacterium tumefaciens Ach5.
Genome Announc. 2015 Jun 4;3(3):e00570-15. doi: 10.1128/genomeA.00570-15.
4
Efficient vir gene induction in Agrobacterium tumefaciens requires virA, virG, and vir box from the same Ti plasmid.
J Bacteriol. 2001 Jul;183(13):4079-89. doi: 10.1128/JB.183.13.4079-4089.2001.
5
Crown gall transformation of lentil (Lens culinaris Medik.) with virulent strains of Agrobacterium tumefaciens.
Plant Cell Rep. 1991 Dec;10(10):489-93. doi: 10.1007/BF00234579.
6
Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid.
J Biotechnol. 2011 Aug 20;155(1):50-62. doi: 10.1016/j.jbiotec.2011.01.010. Epub 2011 Feb 15.
7
Transposition of Tn904 encoding streptomycin resistance into the octopine Ti plasmid of Agrobacterium tumefaciens.
J Bacteriol. 1980 Jan;141(1):129-36. doi: 10.1128/jb.141.1.129-136.1980.
8
Genome engineering of Agrobacterium tumefaciens using the lambda Red recombination system.
Appl Microbiol Biotechnol. 2014 Mar;98(5):2165-72. doi: 10.1007/s00253-013-5412-x. Epub 2013 Dec 3.
9
Grown gall plant tumors of abnormal morphology, induced by Agrobacterium tumefaciens carrying mutated octopine Ti plasmids; analysis of T-DNA functions.
Gene. 1981 Jun-Jul;14(1-2):33-50. doi: 10.1016/0378-1119(81)90146-3.
10
Nucleotide sequence and transcript map of the Agrobacterium tumefaciens Ti plasmid-encoded octopine synthase gene.
J Mol Appl Genet. 1982;1(6):499-511.
引用本文的文献
1
The genome sequence of hairy root Rhizobium rhizogenes strain LBA9402: Bioinformatics analysis suggests the presence of a new opine system in the agropine Ri plasmid.
Microbiologyopen. 2021 Mar;10(2):e1180. doi: 10.1002/mbo3.1180.
2
Destabilization of the Tumor-Inducing Plasmid from an Octopine-Type Lineage Drives a Large Deletion in the Co-resident At Megaplasmid.
G3 (Bethesda). 2019 Oct 7;9(10):3489-3500. doi: 10.1534/g3.119.400554.
3
Complete Sequence of Succinamopine Ti-Plasmid pTiEU6 Reveals Its Evolutionary Relatedness with Nopaline-Type Ti-Plasmids.
Genome Biol Evol. 2019 Sep 1;11(9):2480-2491. doi: 10.1093/gbe/evz173.
4
Genomic and Biotechnological Characterization of the Heavy-Metal Resistant, Arsenic-Oxidizing Bacterium Ensifer sp. M14.
Genes (Basel). 2018 Jul 27;9(8):379. doi: 10.3390/genes9080379.
5
More than Rotating Flagella: Lipopolysaccharide as a Secondary Receptor for Flagellotropic Phage 7-7-1.
J Bacteriol. 2018 Sep 10;200(19). doi: 10.1128/JB.00363-18. Print 2018 Oct 1.
6
Broad-Host-Range Expression Reveals Native and Host Regulatory Elements That Influence Heterologous Antibiotic Production in Gram-Negative Bacteria.
mBio. 2017 Sep 5;8(5):e01291-17. doi: 10.1128/mBio.01291-17.
7
Cellular factories for coenzyme Q production.
Microb Cell Fact. 2017 Mar 2;16(1):39. doi: 10.1186/s12934-017-0646-4.
8
The widely used Nicotiana benthamiana 16c line has an unusual T-DNA integration pattern including a transposon sequence.
PLoS One. 2017 Feb 23;12(2):e0171311. doi: 10.1371/journal.pone.0171311. eCollection 2017.
9
Characterization, correction and de novo assembly of an Oxford Nanopore genomic dataset from Agrobacterium tumefaciens.
Sci Rep. 2016 Jun 28;6:28625. doi: 10.1038/srep28625.
10
Cloning, expression, purification and crystallization of a pair of novel virulence factors, SghA and SghR, from Agrobacterium tumefaciens.
Acta Crystallogr F Struct Biol Commun. 2015 Sep;71(Pt 9):1139-45. doi: 10.1107/S2053230X15012881. Epub 2015 Aug 25.
本文引用的文献
1
Reconciliation of sequence data and updated annotation of the genome of Agrobacterium tumefaciens C58, and distribution of a linear chromosome in the genus Agrobacterium.
Appl Environ Microbiol. 2013 Feb;79(4):1414-7. doi: 10.1128/AEM.03192-12. Epub 2012 Dec 14.
2
Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid.
J Biotechnol. 2011 Aug 20;155(1):50-62. doi: 10.1016/j.jbiotec.2011.01.010. Epub 2011 Feb 15.
3
Quake: quality-aware detection and correction of sequencing errors.
Genome Biol. 2010;11(11):R116. doi: 10.1186/gb-2010-11-11-r116. Epub 2010 Nov 29.
4
Rapid and efficient identification of Agrobacterium species by recA allele analysis: Agrobacterium recA diversity.
Microb Ecol. 2010 Nov;60(4):862-72. doi: 10.1007/s00248-010-9685-7. Epub 2010 Jun 3.
5
Genome sequences of three agrobacterium biovars help elucidate the evolution of multichromosome genomes in bacteria.
J Bacteriol. 2009 Apr;191(8):2501-11. doi: 10.1128/JB.01779-08. Epub 2009 Feb 27.
6
Velvet: algorithms for de novo short read assembly using de Bruijn graphs.
Genome Res. 2008 May;18(5):821-9. doi: 10.1101/gr.074492.107. Epub 2008 Mar 18.
7
The RAST Server: rapid annotations using subsystems technology.
BMC Genomics. 2008 Feb 8;9:75. doi: 10.1186/1471-2164-9-75.
8
The bases of crown gall tumorigenesis.
J Bacteriol. 2000 Jul;182(14):3885-95. doi: 10.1128/JB.182.14.3885-3895.2000.
9
Octopine Ti-plasmid deletion mutants of agrobacterium tumefaciens with emphasis on the right side of the T-region.
Plasmid. 1982 Jan;7(1):15-29. doi: 10.1016/0147-619x(82)90023-3.
10
Characterization of Tn904 insertions in octopine Ti plasmid mutants of Agrobacterium tumefaciens.
J Bacteriol. 1980 Oct;144(1):82-91. doi: 10.1128/jb.144.1.82-91.1980.
Zotero 插件