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加勒比海地区非洲绿猴的 MHC 多态性。

MHC polymorphism in Caribbean African green monkeys.

机构信息

Laboratoire d'Immunogénétique Moléculaire (LIMT), EA 3034, Faculté de Médecine Purpan, Toulouse 3 (Université Paul Sabatier), Laboratoire d'immunologie, CHU de Toulouse, 1 avenue Jean Poulhes, TSA 50032, 31059, Toulouse cedex 9, France.

出版信息

Immunogenetics. 2014 Jun;66(6):353-60. doi: 10.1007/s00251-014-0770-9. Epub 2014 Mar 28.

DOI:10.1007/s00251-014-0770-9
PMID:24676686
Abstract

African green monkeys (AGM) are among the most widely used nonhuman primate models used in various fields of medical research. One species of AGM that originated from West Africa, Chlorocebus sabaeus, was introduced three centuries ago in the Caribbean islands. We present here a systematic study of the major histocompatibility complex (MHC) polymorphism of Caribbean AGM which is currently frequently used as an animal model. We studied 54 animals originated from Barbados (N=25) or Saint Kitts (N=29). The MHC polymorphism was characterized by means of 17 MHC microsatellites spread across MHC and DRB genotyping by DGGE sequencing. We defined nine frequent MHC haplotypes of which two were found in the two insular populations suggesting either past exchanges between the two populations or a common origin of the founders of the two populations. By the analysis of a previously described EST library, we characterized 38 MHC cDNA sequences (17 class I and 21 class II). In conclusion, we characterized for the first time the MHC polymorphism of Barbados and Saint Kitts AGM. We found a restricted polymorphism due to a founding effect, which is responsible for a strong bottleneck. The poorness of MHC polymorphism observed in the Caribbean AGM populations is similar to that observed in the Mauritian cynomolgus macaque population.

摘要

非洲绿猴(AGM)是医学研究各个领域中使用最广泛的非人类灵长类动物模型之一。原产于西非的绿猴亚种,Chlorocebus sabaeus,三百年前被引入加勒比海岛屿。我们在这里对目前经常用作动物模型的加勒比 AGM 的主要组织相容性复合体(MHC)多态性进行了系统研究。我们研究了 54 只来自巴巴多斯(N=25)或圣基茨(N=29)的动物。通过 DGGE 测序对 MHC 和 DRB 基因分型进行了 17 个 MHC 微卫星的 MHC 多态性特征分析。我们定义了九个常见的 MHC 单倍型,其中两个在两个岛屿群体中发现,这表明两个群体之间存在过去的交流或两个群体的创始者有共同的起源。通过对先前描述的 EST 文库的分析,我们鉴定了 38 个 MHC cDNA 序列(17 个 I 类和 21 个 II 类)。总之,我们首次对巴巴多斯和圣基茨 AGM 的 MHC 多态性进行了描述。我们发现由于创始效应导致多态性受限,这导致了强烈的瓶颈效应。在加勒比 AGM 群体中观察到的 MHC 多态性的匮乏与在毛里求斯猕猴群体中观察到的情况相似。

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本文引用的文献

1
Systems biology of the vervet monkey.绿猴的系统生物学
ILAR J. 2013;54(2):122-43. doi: 10.1093/ilar/ilt049.
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Great ape genetic diversity and population history.巨猿的遗传多样性和种群历史。
Nature. 2013 Jul 25;499(7459):471-5. doi: 10.1038/nature12228. Epub 2013 Jul 3.
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SIVagm infection in wild African green monkeys from South Africa: epidemiology, natural history, and evolutionary considerations.南非野生绿长尾猴中 SIVagm 的感染:流行病学、自然史和进化考虑。
绿猴(Chlorocebus aethiops sabaeus)的基因组。
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Local Virus Extinctions following a Host Population Bottleneck.宿主种群瓶颈后的局部病毒灭绝
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Am J Primatol. 2013 Apr;75(4):350-60. doi: 10.1002/ajp.22113. Epub 2013 Jan 10.
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IPD--the Immuno Polymorphism Database.IPD——免疫多态性数据库。
Nucleic Acids Res. 2013 Jan;41(Database issue):D1234-40. doi: 10.1093/nar/gks1140. Epub 2012 Nov 24.
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Positive selection in the major histocompatibility complex class III region of cynomolgus macaques (Macaca fascicularis) of the Philippines origin.菲律宾起源的食蟹猕猴(Macaca fascicularis)主要组织相容性复合体III类区域中的正向选择。
Tissue Antigens. 2013 Jan;81(1):12-8. doi: 10.1111/tan.12028. Epub 2012 Nov 8.
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Study of cynomolgus monkey (Macaca fascicularis) Mhc DRB gene polymorphism in four populations.四种群体食蟹猴(Macaca fascicularis)Mhc DRB 基因多态性研究。
Immunogenetics. 2012 Aug;64(8):605-14. doi: 10.1007/s00251-012-0613-5. Epub 2012 Apr 4.
8
Expression sequence tag library derived from peripheral blood mononuclear cells of the chlorocebus sabaeus.来源于食蟹猴外周血单核细胞的表达序列标签文库。
BMC Genomics. 2012 Jun 22;13:279. doi: 10.1186/1471-2164-13-279.
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Nomenclature report on the major histocompatibility complex genes and alleles of Great Ape, Old and New World monkey species.大猿、旧大陆猴和新大陆猴主要组织相容性复合体基因和等位基因的命名报告。
Immunogenetics. 2012 Aug;64(8):615-31. doi: 10.1007/s00251-012-0617-1. Epub 2012 Apr 18.
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