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用于异质纵向有序数据的混合过渡模型:及其在纵向细菌性阴道病数据中的应用

A mixture of transition models for heterogeneous longitudinal ordinal data: with applications to longitudinal bacterial vaginosis data.

作者信息

Cheon Kyeongmi, Thoma Marie E, Kong Xiangrong, Albert Paul S

机构信息

Biometrics Research, Merck, West Point, PA 19486, U.S.A.

出版信息

Stat Med. 2014 Aug 15;33(18):3204-13. doi: 10.1002/sim.6151. Epub 2014 Mar 27.

DOI:10.1002/sim.6151
PMID:24676689
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4191924/
Abstract

Markov models used to analyze transition patterns in discrete longitudinal data are based on the limiting assumption that individuals follow the common underlying transition process. However, when one is interested in diseases with different disease or severity subtypes, explicitly modeling subpopulation-specific transition patterns may be appropriate. We propose a model which captures heterogeneity in the transition process through a finite mixture model formulation and provides a framework for identifying subpopulations at different risks. We apply the procedure to longitudinal bacterial vaginosis study data and demonstrate that the model fits the data well. Further, we show that under the mixture model formulation, we can make the important distinction between how covariates affect transition patterns unique to each of the subpopulations and how they affect which subgroup a participant will belong to. Practically, covariate effects on subpopulation-specific transition behavior and those on subpopulation membership can be interpreted as effects on short-term and long-term transition behavior. We further investigate models with higher-order subpopulation-specific transition dependence.

摘要

用于分析离散纵向数据中转变模式的马尔可夫模型基于个体遵循共同潜在转变过程这一极限假设。然而,当人们对具有不同疾病或严重程度亚型的疾病感兴趣时,明确地对特定亚群体的转变模式进行建模可能是合适的。我们提出了一个模型,该模型通过有限混合模型公式捕捉转变过程中的异质性,并提供了一个识别不同风险亚群体的框架。我们将该方法应用于纵向细菌性阴道病研究数据,并证明该模型与数据拟合良好。此外,我们表明,在混合模型公式下,我们可以在协变量如何影响每个亚群体特有的转变模式以及它们如何影响参与者将属于哪个亚组之间做出重要区分。实际上,协变量对特定亚群体转变行为的影响以及对亚群体成员身份的影响可以解释为对短期和长期转变行为的影响。我们进一步研究了具有高阶特定亚群体转变依赖性的模型。

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本文引用的文献

1
An evaluation of the natural history of bacterial vaginosis using transition models.使用转移模型评估细菌性阴道病的自然史。
Sex Transm Dis. 2011 Dec;38(12):1131-6. doi: 10.1097/OLQ.0b013e31822e60f4.
2
The natural history of bacterial vaginosis diagnosed by gram stain among women in Rakai, Uganda.在乌干达拉凯地区,通过革兰氏染色诊断的细菌性阴道病的自然病史。
Sex Transm Dis. 2011 Nov;38(11):1040-5. doi: 10.1097/OLQ.0b013e3182275499.
3
The short-term variability of bacterial vaginosis diagnosed by Nugent Gram stain criteria among sexually active women in Rakai, Uganda.乌干达拉凯地区性活跃女性中,依据 Nugent Gram 染色标准诊断的细菌性阴道病的短期变异性。
Sex Transm Dis. 2011 Feb;38(2):111-6. doi: 10.1097/OLQ.0b013e3181f0bdd0.
4
Longitudinal changes in vaginal microbiota composition assessed by gram stain among never sexually active pre- and postmenarcheal adolescents in Rakai, Uganda.在乌干达拉凯地区,通过革兰氏染色评估月经初潮前和月经初潮后从未有过性行为的青少年阴道微生物群组成的纵向变化。
J Pediatr Adolesc Gynecol. 2011 Feb;24(1):42-7. doi: 10.1016/j.jpag.2010.07.002. Epub 2010 Aug 14.
5
The effect of vaginal douching cessation on bacterial vaginosis: a pilot study.停止阴道灌洗对细菌性阴道病的影响:一项初步研究。
Am J Obstet Gynecol. 2008 Jun;198(6):628.e1-7. doi: 10.1016/j.ajog.2007.11.043. Epub 2008 Mar 4.
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A class of markov models for longitudinal ordinal data.一类用于纵向有序数据的马尔可夫模型。
Biometrics. 2007 Dec;63(4):1060-7. doi: 10.1111/j.1541-0420.2007.00800.x.
7
Findings associated with recurrence of bacterial vaginosis among adolescents attending sexually transmitted diseases clinics.在性传播疾病诊所就诊的青少年中与细菌性阴道病复发相关的研究结果。
J Pediatr Adolesc Gynecol. 2007 Aug;20(4):225-31. doi: 10.1016/j.jpag.2006.11.009.
8
Bacterial flora of the female genital tract: function and immune regulation.女性生殖道的细菌菌群:功能与免疫调节
Best Pract Res Clin Obstet Gynaecol. 2007 Jun;21(3):347-54. doi: 10.1016/j.bpobgyn.2006.12.004. Epub 2007 Jan 9.
9
High recurrence rates of bacterial vaginosis over the course of 12 months after oral metronidazole therapy and factors associated with recurrence.口服甲硝唑治疗后12个月内细菌性阴道病的高复发率及复发相关因素。
J Infect Dis. 2006 Jun 1;193(11):1478-86. doi: 10.1086/503780. Epub 2006 Apr 26.
10
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J Infect Dis. 2006 Feb 15;193(4):556-62. doi: 10.1086/499824. Epub 2006 Jan 17.