Choudhari Sulbha, Lohia Ruchi, Grigoriev Andrey
Center for Computational and Integrative Biology, Rutgers University, Camden, 315 Penn St, Camden NJ 08102, USA.
J Bioinform Comput Biol. 2014 Apr;12(2):1441003. doi: 10.1142/S0219720014410030. Epub 2014 Mar 6.
The temperature in the Arctic region has been increasing in the recent past accompanied by melting of its glaciers. We took a snapshot of the current microbial inhabitation of an Alaskan glacier (which can be considered as one of the simplest possible ecosystems) by using metagenomic sequencing of 16S rRNA recovered from ice/snow samples. Somewhat contrary to our expectations and earlier estimates, a rich and diverse microbial population of more than 2,500 species was revealed including several species of Archaea that has been identified for the first time in the glaciers of the Northern hemisphere. The most prominent bacterial groups found were Proteobacteria, Bacteroidetes, and Firmicutes. Firmicutes were not reported in large numbers in a previously studied Alpine glacier but were dominant in an Antarctic subglacial lake. Representatives of Cyanobacteria, Actinobacteria and Planctomycetes were among the most numerous, likely reflecting the dependence of the ecosystem on the energy obtained through photosynthesis and close links with the microbial community of the soil. Principal component analysis (PCA) of nucleotide word frequency revealed distinct sequence clusters for different taxonomic groups in the Alaskan glacier community and separate clusters for the glacial communities from other regions of the world. Comparative analysis of the community composition and bacterial diversity present in the Byron glacier in Alaska with other environments showed larger overlap with an Arctic soil than with a high Arctic lake, indicating patterns of community exchange and suggesting that these bacteria may play an important role in soil development during glacial retreat.
近年来,北极地区气温不断上升,冰川随之融化。我们通过对从冰雪样本中提取的16S rRNA进行宏基因组测序,对阿拉斯加一座冰川(可被视为最简单的可能生态系统之一)当前的微生物群落进行了快照式研究。与我们的预期和早期估计有些相反的是,研究发现了一个丰富多样的微生物种群,有超过2500个物种,其中包括几种首次在北半球冰川中被鉴定出的古菌。发现的最主要细菌类群是变形菌门、拟杆菌门和厚壁菌门。厚壁菌门在之前研究的一座高山冰川中并未大量报道,但在南极的一个冰下湖中占主导地位。蓝细菌、放线菌和浮霉菌门的代表是数量最多的微生物之一,这可能反映了该生态系统对通过光合作用获取能量的依赖以及与土壤微生物群落的紧密联系。对核苷酸词频的主成分分析(PCA)显示,阿拉斯加冰川群落中不同分类群有明显的序列簇,而来自世界其他地区的冰川群落则有单独的簇。对阿拉斯加拜伦冰川中存在的群落组成和细菌多样性与其他环境进行的比较分析表明,与北极土壤的重叠比与高北极湖泊的重叠更大,这表明了群落交换模式,并暗示这些细菌可能在冰川消退期间的土壤发育中发挥重要作用。