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磁色素结构域的结构与进化:不再孤单。

Structure and evolution of the magnetochrome domains: no longer alone.

机构信息

Commissariat à l'énergie Atomique, DSV, IBEB, Lab Bioenerget Cellulaire Saint-Paul-lez-Durance, France ; Centre National de la Recherche Scientifique, UMR Biol Veget and Microbiol Environ Saint-Paul-lez-Durance, France ; Aix-Marseille Université Saint-Paul-lez-Durance, France.

出版信息

Front Microbiol. 2014 Mar 25;5:117. doi: 10.3389/fmicb.2014.00117. eCollection 2014.

Abstract

Magnetotactic bacteria (MTB) can swim along Earth's magnetic field lines, thanks to the alignment of dedicated cytoplasmic organelles. These organelles, termed magnetosomes, are proteolipidic vesicles filled by a 35-120 nm crystal of either magnetite or greigite. The formation and alignment of magnetosomes are mediated by a group of specific genes, the mam genes, encoding the magnetosome-associated proteins. The whole process of magnetosome biogenesis can be divided into four sequential steps; (i) cytoplasmic membrane invagination, (ii) magnetosomes alignment, (iii) iron crystal nucleation and (iv) species-dependent mineral size and shape control. Since both magnetite and greigite are a mix of iron (III) and iron (II), iron redox state management within the magnetosome vesicle is a key issue. Recently, studies have started pointing out the importance of a MTB-specific c-type cytochrome domain found in several magnetosome-associated proteins (MamE, P, T, and X). This magnetochrome (MCR) domain is almost always found in tandem, and this tandem is either found alone (MamT), in combination with a PDZ domain (MamP), a domain of unknown function (MamX) or with a trypsin combined to one or two PDZ domains (MamE). By taking advantage of new genomic data available on MTB and a recent structural study of MamP, which helped define the MCR domain boundaries, we attempt to retrace the evolutionary history within and between the different MCR-containing proteins. We propose that the observed tandem repeat of MCR is the result of a convergent evolution and attempt to explain why this domain is rarely found alone.

摘要

趋磁细菌 (MTB) 能够沿着地球的磁场线游动,这要归功于专门的细胞质细胞器的排列。这些细胞器被称为磁小体,是由 35-120nm 的磁铁矿或纤铁矿晶体填充的蛋白脂囊泡。磁小体的形成和排列是由一组特定的基因 mam 基因介导的,这些基因编码与磁小体相关的蛋白。磁小体生物发生的整个过程可以分为四个连续的步骤:(i)细胞质膜内陷,(ii)磁小体排列,(iii)铁晶核形成,(iv)物种依赖性的矿物尺寸和形状控制。由于磁铁矿和纤铁矿都是铁(III)和铁(II)的混合物,因此磁小体囊泡内的铁氧化还原状态管理是一个关键问题。最近的研究开始指出,在几种与磁小体相关的蛋白(MamE、P、T 和 X)中发现的一种 MTB 特异性 c 型细胞色素结构域的重要性。这个磁色素(MCR)结构域几乎总是串联存在,并且这种串联结构要么单独存在(MamT),要么与 PDZ 结构域(MamP)、一个未知功能的结构域(MamX)或与一个或两个 PDZ 结构域结合的胰蛋白酶结合(MamE)。利用现有的 MTB 基因组数据和最近对 MamP 的结构研究,我们尝试追溯不同含有 MCR 蛋白之间和内部的进化历史。我们提出,观察到的 MCR 串联重复是趋同进化的结果,并试图解释为什么这个结构域很少单独存在。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/14d4/3971196/57bbde053e40/fmicb-05-00117-g0001.jpg

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