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多形性胶质母细胞瘤的数据分析与组织类型分类

Data analysis and tissue type assignment for glioblastoma multiforme.

作者信息

Li Yuqian, Pi Yiming, Liu Xin, Liu Yuhan, Van Cauter Sofie

机构信息

School of Electronic Engineering, University of Electronic Science and Technology of China, Chengdu 611731, China.

Department of Radiology and Department of Imaging and Pathology, University Hospitals of Leuven, 3001 Leuven, Belgium.

出版信息

Biomed Res Int. 2014;2014:762126. doi: 10.1155/2014/762126. Epub 2014 Mar 3.

DOI:10.1155/2014/762126
PMID:24724098
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3958772/
Abstract

Glioblastoma multiforme (GBM) is characterized by high infiltration. The interpretation of MRSI data, especially for GBMs, is still challenging. Unsupervised methods based on NMF by Li et al. (2013, NMR in Biomedicine) and Li et al. (2013, IEEE Transactions on Biomedical Engineering) have been proposed for glioma recognition, but the tissue types is still not well interpreted. As an extension of the previous work, a tissue type assignment method is proposed for GBMs based on the analysis of MRSI data and tissue distribution information. The tissue type assignment method uses the values from the distribution maps of all three tissue types to interpret all the information in one new map and color encodes each voxel to indicate the tissue type. Experiments carried out on in vivo MRSI data show the feasibility of the proposed method. This method provides an efficient way for GBM tissue type assignment and helps to display information of MRSI data in a way that is easy to interpret.

摘要

多形性胶质母细胞瘤(GBM)的特点是具有高度浸润性。磁共振波谱成像(MRSI)数据的解读,尤其是对于GBM来说,仍然具有挑战性。Li等人(2013年,《NMR in Biomedicine》)和Li等人(2013年,《IEEE Transactions on Biomedical Engineering》)提出了基于非负矩阵分解(NMF)的无监督方法用于胶质瘤识别,但组织类型仍未得到很好的解读。作为先前工作的延伸,基于对MRSI数据和组织分布信息的分析,提出了一种针对GBM的组织类型分配方法。该组织类型分配方法使用来自所有三种组织类型分布图的值,在一个新图中解读所有信息,并对每个体素进行颜色编码以指示组织类型。对体内MRSI数据进行的实验表明了该方法的可行性。此方法为GBM组织类型分配提供了一种有效途径,并有助于以易于解读的方式显示MRSI数据的信息。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/497b/3958772/eec9806e23de/BMRI2014-762126.005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/497b/3958772/d4b3f0e041c4/BMRI2014-762126.001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/497b/3958772/37e86cf37ad9/BMRI2014-762126.002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/497b/3958772/3d00079ec4af/BMRI2014-762126.003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/497b/3958772/5aea17503e7e/BMRI2014-762126.004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/497b/3958772/eec9806e23de/BMRI2014-762126.005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/497b/3958772/d4b3f0e041c4/BMRI2014-762126.001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/497b/3958772/37e86cf37ad9/BMRI2014-762126.002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/497b/3958772/3d00079ec4af/BMRI2014-762126.003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/497b/3958772/5aea17503e7e/BMRI2014-762126.004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/497b/3958772/eec9806e23de/BMRI2014-762126.005.jpg

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IEEE Trans Biomed Eng. 2013 Jun;60(6):1760-3. doi: 10.1109/TBME.2012.2228651. Epub 2012 Nov 21.
2
Hierarchical non-negative matrix factorization (hNMF): a tissue pattern differentiation method for glioblastoma multiforme diagnosis using MRSI.层次非负矩阵分解(hNMF):一种使用 MRSI 进行多形性胶质母细胞瘤诊断的组织模式分化方法。
NMR Biomed. 2013 Mar;26(3):307-19. doi: 10.1002/nbm.2850. Epub 2012 Sep 13.
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Non-negative matrix factorisation methods for the spectral decomposition of MRS data from human brain tumours.
基于非负矩阵分解的人脑肿瘤 MRS 数据谱分解方法。
BMC Bioinformatics. 2012 Mar 8;13:38. doi: 10.1186/1471-2105-13-38.
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MR-visible lipids and the tumor microenvironment.MR 可见脂质与肿瘤微环境。
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Ex vivo high resolution magic angle spinning metabolic profiles describe intratumoral histopathological tissue properties in adult human gliomas.离体高分辨魔角旋转代谢谱描述成人脑胶质瘤肿瘤内组织病理学特性。
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Pattern recognition of MRSI data shows regions of glioma growth that agree with DTI markers of brain tumor infiltration.磁共振波谱成像数据的模式识别显示出与脑肿瘤浸润的 DTI 标志物一致的胶质瘤生长区域。
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Nosologic imaging of the brain: segmentation and classification using MRI and MRSI.脑部疾病分类成像:利用磁共振成像(MRI)和磁共振波谱成像(MRSI)进行分割与分类
NMR Biomed. 2009 May;22(4):374-90. doi: 10.1002/nbm.1347.
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Fast nosological imaging using canonical correlation analysis of brain data obtained by two-dimensional turbo spectroscopic imaging.使用二维涡轮光谱成像获得的脑数据进行典型相关分析的快速疾病分类成像。
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