Kamaraj Balu, Rajendran Vidya, Sethumadhavan Rao, Kumar Chundi Vinay, Purohit Rituraj
a School of Bio Sciences and Technology (SBST), Bioinformatics Division , Vellore Institute of Technology University , Vellore 632014 , Tamil Nadu , India.
J Biomol Struct Dyn. 2015;33(4):834-44. doi: 10.1080/07391102.2014.915762. Epub 2014 May 14.
Amyotrophic lateral sclerosis 6 (ALS6) is an autosomal recessive disorder caused by heterozygous mutation in the Fused in Sarcoma (FUS) gene. ALS6 is a neurodegenerative disorder, which affects the upper and lower motor neurons in the brain and spinal cord, resulting in fatal paralysis. ALS6 is caused by the genetic mutation in the proline/tyrosine-nuclear localization signals of the Fused in sarcoma Protein (FUS). FUS gene also known as TLS (Translocated in liposarcoma), which encodes a protein called RNA-binding protein-Fus (FUS), has a molecular weight of 75 kDa. In this analysis, we applied computational approach to filter the most deleterious and neurodegenerative disease of ALS6-associated mutation on FUS protein. We found H517Q as most deleterious and disease associated using PolyPhen 2.0, I-Mutant 3.0, SIFT, SNPs&GO, PhD-SNP, Pmut, and Mutpred tools. Molecular dynamics simulation (MDS) approach was conducted to investigate conformational changes in the mutant protein structure with respect to its native conformation. MDS results showed the flexibility loss in mutant (H517Q) FUS protein. Due to mutation, FUS protein became more rigid in nature and might alter the structural and functional behavior of protein and play a major role in inducing ALS6. The results obtained from this investigation would help in the field of pharmacogenomics to develop a potent drug target against FUS-associated neurodegenerative diseases.
肌萎缩侧索硬化症6型(ALS6)是一种常染色体隐性疾病,由肉瘤融合蛋白(FUS)基因的杂合突变引起。ALS6是一种神经退行性疾病,会影响大脑和脊髓中的上下运动神经元,导致致命性瘫痪。ALS6是由肉瘤融合蛋白(FUS)的脯氨酸/酪氨酸 - 核定位信号中的基因突变引起的。FUS基因也被称为TLS(在脂肪肉瘤中易位),它编码一种名为RNA结合蛋白 - Fus(FUS)的蛋白质,分子量为75 kDa。在本分析中,我们应用计算方法筛选出与ALS6相关的FUS蛋白突变中最具有害性和神经退行性疾病的突变。我们使用PolyPhen 2.0、I - Mutant 3.0、SIFT、SNPs&GO、PhD - SNP、Pmut和Mutpred工具发现H517Q是最具有害性且与疾病相关的突变。进行了分子动力学模拟(MDS)方法来研究突变蛋白结构相对于其天然构象的构象变化。MDS结果显示突变型(H517Q)FUS蛋白的柔韧性丧失。由于突变,FUS蛋白在性质上变得更加刚性,可能会改变蛋白质的结构和功能行为,并在诱发ALS6中起主要作用。本次研究获得的结果将有助于药物基因组学领域开发针对FUS相关神经退行性疾病的有效药物靶点。