Scoppola Ernesto, Sodo Armida, McLain Sylvia E, Ricci Maria Antonietta, Bruni Fabio
Dipartimento di Scienze, Università degli Studi di Roma Tre, Via della Vasca Navale 84, 00146 Roma, Italy.
Department of Biochemistry, University of Oxford, South Park Road, Oxford, Oxfordshire OX1 3QU.
Biophys J. 2014 Apr 15;106(8):1701-9. doi: 10.1016/j.bpj.2014.01.046.
Water-peptide interactions play an important role in determining peptide structure and function. Nevertheless, a microscopic description of these interactions is still incomplete. In this study we have investigated at the atomic scale length the interaction between water and the tripeptide glutathione. The rationale behind this work, based on the combination between a neutron diffraction experiment and a computer simulation, is twofold. It extends previous studies on amino acids, addressing issues such as the perturbation of the water network brought by a larger biomolecule in solution. In addition, and more importantly, it seeks a possible link between the atomic length scale description of the glutathione-water interaction with the specific biological functionality of glutathione, an important intracellular antioxidant. Results indicate a rather weak hydrogen bond between the thiol (-SH) group of cysteine and its first neighbor water molecule. This -SH group serves as a proton donor, is responsible for the biological activity of glutathione, and it is involved in the formation of glutathione disulfide, the oxidized form of glutathione. Moreover, the hydration shell of the chemically identical carboxylate group on the glutamic acid residue and on the glycine residue shows an intriguing different spatial location of water molecules and coordination numbers around the two CO2(-) groups.
水与肽的相互作用在决定肽的结构和功能方面起着重要作用。然而,对这些相互作用的微观描述仍不完整。在本研究中,我们在原子尺度上研究了水与三肽谷胱甘肽之间的相互作用。这项基于中子衍射实验和计算机模拟相结合的工作背后的基本原理有两个方面。它扩展了先前对氨基酸的研究,解决了诸如溶液中较大生物分子对水网络的扰动等问题。此外,更重要的是,它寻求谷胱甘肽 - 水相互作用的原子尺度描述与谷胱甘肽(一种重要的细胞内抗氧化剂)的特定生物学功能之间的可能联系。结果表明,半胱氨酸的巯基(-SH)与其第一个相邻水分子之间存在相当弱的氢键。这个 -SH 基团作为质子供体,负责谷胱甘肽的生物活性,并且参与谷胱甘肽二硫化物(谷胱甘肽的氧化形式)的形成。此外,谷氨酸残基和甘氨酸残基上化学性质相同羧酸根基团的水合壳层显示出围绕两个 CO2(-) 基团的水分子空间位置和配位数存在有趣的差异。