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在凤凰号着陆器航天器组装过程中分离出的新型菌株——嗜热栖热放线菌的基因组序列草图

Draft Genome Sequence of Deinococcus phoenicis, a Novel Strain Isolated during the Phoenix Lander Spacecraft Assembly.

作者信息

Stepanov Victor G, Vaishampayan Parag, Venkateswaran Kasthuri, Fox George E

机构信息

Department of Biology and Biochemistry, University of Houston, Houston, Texas, USA.

出版信息

Genome Announc. 2014 Apr 24;2(2):e00301-14. doi: 10.1128/genomeA.00301-14.

DOI:10.1128/genomeA.00301-14
PMID:24762934
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3999491/
Abstract

Deinococcus phoenicis strain 1P10ME(T) is a radiation- and desiccation-resistant bacterium isolated from a cleanroom facility where the Phoenix Lander spacecraft was assembled. In order to facilitate investigations of the nature of the extreme resistance of D. phoenicis to bactericidal factors, a draft genome sequence of D. phoenicis was determined.

摘要

嗜热栖热放线菌菌株1P10ME(T)是一种耐辐射和耐干燥的细菌,从凤凰号着陆器航天器组装的洁净室设施中分离得到。为了便于研究嗜热栖热放线菌对杀菌因子的极端抗性的本质,测定了嗜热栖热放线菌的基因组草图序列。

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本文引用的文献

1
Deinococcus phoenicis sp. nov., an extreme ionizing-radiation-resistant bacterium isolated from the Phoenix Lander assembly facility.火球菌属新种,一种从凤凰号着陆器装配设施中分离得到的极端耐辐射电离的细菌。
Int J Syst Evol Microbiol. 2014 Oct;64(Pt 10):3441-3446. doi: 10.1099/ijs.0.063107-0. Epub 2014 Jul 16.
2
Oxidative stress resistance in Deinococcus radiodurans.耐辐射球菌的抗氧化应激能力。
Microbiol Mol Biol Rev. 2011 Mar;75(1):133-91. doi: 10.1128/MMBR.00015-10.
3
Prodigal: prokaryotic gene recognition and translation initiation site identification.普罗迪格:原核基因识别和翻译起始位点鉴定。
BMC Bioinformatics. 2010 Mar 8;11:119. doi: 10.1186/1471-2105-11-119.
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BLAST+: architecture and applications.BLAST+:体系结构与应用。
BMC Bioinformatics. 2009 Dec 15;10:421. doi: 10.1186/1471-2105-10-421.
5
Velvet: algorithms for de novo short read assembly using de Bruijn graphs.《天鹅绒:使用德布鲁因图进行从头短读长拼接的算法》
Genome Res. 2008 May;18(5):821-9. doi: 10.1101/gr.074492.107. Epub 2008 Mar 18.
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Identifying bacterial genes and endosymbiont DNA with Glimmer.使用Glimmer识别细菌基因和内共生体DNA。
Bioinformatics. 2007 Mar 15;23(6):673-9. doi: 10.1093/bioinformatics/btm009. Epub 2007 Jan 19.
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tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.tRNAscan-SE:用于改进基因组序列中转运RNA基因检测的程序。
Nucleic Acids Res. 1997 Mar 1;25(5):955-64. doi: 10.1093/nar/25.5.955.