Chaze Thibault, Guillot Alain, Valot Benoît, Langella Olivier, Chamot-Rooke Julia, Di Guilmi Anne-Marie, Trieu-Cuot Patrick, Dramsi Shaynoor, Mistou Michel-Yves
From the ‡INRA, MICALIS UMR-1319, 78352 Jouy-en-Josas cedex, France; §AgroParisTech, MICALIS UMR-1319, 78352 Jouy-en-Josas cedex, France; ¶¶Institut Pasteur, Unité de Spectrométrie de Masse Structurale et Protéomique, 28 rue du Dr Roux, 75015 Paris, France;
¶INRA, PAPPSO, MICALIS UMR-1319, 78352 Jouy en Josas cedex, France;
Mol Cell Proteomics. 2014 Sep;13(9):2168-82. doi: 10.1074/mcp.M114.038075. Epub 2014 May 5.
Serine-rich (Srr) proteins exposed at the surface of Gram-positive bacteria are a family of adhesins that contribute to the virulence of pathogenic staphylococci and streptococci. Lectin-binding experiments have previously shown that Srr proteins are heavily glycosylated. We report here the first mass-spectrometry analysis of the glycosylation of Streptococcus agalactiae Srr1. After Srr1 enrichment and trypsin digestion, potential glycopeptides were identified in collision induced dissociation spectra using X! Tandem. The approach was then refined using higher energy collisional dissociation fragmentation which led to the simultaneous loss of sugar residues, production of diagnostic oxonium ions and backbone fragmentation for glycopeptides. This feature was exploited in a new open source software tool (SpectrumFinder) developed for this work. By combining these approaches, 27 glycopeptides corresponding to six different segments of the N-terminal region of Srr1 [93-639] were identified. Our data unambiguously indicate that the same protein residue can be modified with different glycan combinations including N-acetylhexosamine, hexose, and a novel modification that was identified as O-acetylated-N-acetylhexosamine. Lectin binding and monosaccharide composition analysis strongly suggested that HexNAc and Hex correspond to N-acetylglucosamine and glucose, respectively. The same protein segment can be modified with a variety of glycans generating a wide structural diversity of Srr1. Electron transfer dissociation was used to assign glycosylation sites leading to the unambiguous identification of six serines and one threonine residues. Analysis of purified Srr1 produced in mutant strains lacking accessory glycosyltransferase encoding genes demonstrates that O-GlcNAcylation is an initial step in Srr1 glycosylation that is likely required for subsequent decoration with Hex. In summary, our data obtained by a combination of fragmentation mass spectrometry techniques associated to a new software tool, demonstrate glycosylation heterogeneity of Srr1, characterize a new protein modification, and identify six glycosylation sites located in the N-terminal region of the protein.
暴露于革兰氏阳性菌表面的富含丝氨酸(Srr)蛋白是一类粘附素,对致病性葡萄球菌和链球菌的毒力有影响。凝集素结合实验先前已表明Srr蛋白高度糖基化。我们在此报告对无乳链球菌Srr1糖基化的首次质谱分析。在Srr1富集和胰蛋白酶消化后,使用X! Tandem在碰撞诱导解离光谱中鉴定潜在的糖肽。然后使用更高能量的碰撞解离碎片化对该方法进行优化,这导致糖残基同时丢失、产生诊断性的鎓离子以及糖肽的主链碎片化。此特性在为此项工作开发的新开源软件工具(SpectrumFinder)中得到利用。通过结合这些方法,鉴定出了与Srr1 [93 - 639] N端区域六个不同片段相对应的27个糖肽。我们的数据明确表明,同一蛋白质残基可被不同的聚糖组合修饰,包括N - 乙酰己糖胺、己糖,以及一种被鉴定为O - 乙酰化 - N - 乙酰己糖胺的新修饰。凝集素结合和单糖组成分析强烈表明,HexNAc和Hex分别对应于N - 乙酰葡糖胺和葡萄糖。同一蛋白质片段可被多种聚糖修饰,从而产生Srr1广泛的结构多样性。使用电子转移解离来确定糖基化位点,从而明确鉴定出六个丝氨酸和一个苏氨酸残基。对在缺乏辅助糖基转移酶编码基因的突变菌株中产生的纯化Srr1的分析表明,O - GlcNAcylation是Srr1糖基化的初始步骤,这可能是随后用Hex修饰所必需的。总之,我们通过与新软件工具相关联的碎片化质谱技术组合获得的数据,证明了Srr1的糖基化异质性,表征了一种新的蛋白质修饰,并鉴定出位于该蛋白质N端区域的六个糖基化位点。