Arquez Moises, Colgan Donald, Castro Lyda R
Grupo de Investigación en Evolución, Sistemática y Ecología Molecular, Universidad del Magdalena, Santa Marta, Colombia.
The Australian Museum, 6 College Street, Sydney 2010, Australia.
Mar Genomics. 2014 Jun;15:45-54. doi: 10.1016/j.margen.2014.04.007. Epub 2014 May 3.
In the present study, we determined the mitochondrial DNA (mtDNA) sequence of three Neritas, Nerita versicolor, Nerita tessellata, and Nerita fulgurans. We present an analysis of the features of their gene content and genome organization and compare these within the genus Nerita, and among the main gastropod groups. The new sequences were used in a phylogenetic analysis including all available gastropod mitochondrial genomes. Genomic lengths were quite conserved, being 15,866bp for N. versicolor, 15,741bp for N. tessellata and 15,343bp for N. fulgurans. Intergenic regions were generally short; genes are transcribed from both strands and have a nucleotide composition high in A and T. The high similarity in nucleotide content of the different sequences, gene composition, as well as an identical genomic organization among the Nerita species compared in this study, indicates a high degree of conservation within this diverse genus. Values of Ka/Ks of the 13 protein coding genes (PCGs) of Nerita species ranged from 0 to 0.18, and suggested different selection pressures in gene sequences. Bayesian phylogenetic analyses using concatenated DNA sequences of the 13 PCGs and the two rRNAs, and of amino acid sequences strongly supported Neritimorpha and Vetigastropoda as sister groups.
在本研究中,我们测定了三种蜒螺(粒花冠小月螺、网纹蜒螺和闪光蜒螺)的线粒体DNA(mtDNA)序列。我们对它们的基因含量和基因组组织特征进行了分析,并在蜒螺属内以及主要腹足纲类群之间进行了比较。新序列被用于系统发育分析,该分析包括所有可用的腹足纲线粒体基因组。基因组长度相当保守,粒花冠小月螺为15,866bp,网纹蜒螺为15,741bp,闪光蜒螺为15,343bp。基因间隔区通常较短;基因从两条链转录,且核苷酸组成中A和T含量较高。本研究中比较的蜒螺物种不同序列的核苷酸含量、基因组成高度相似,以及基因组组织相同,表明在这个多样化的属内具有高度的保守性。蜒螺物种13个蛋白质编码基因(PCGs)的Ka/Ks值范围为0至0.18,表明基因序列存在不同的选择压力。使用13个PCGs和两个rRNAs的串联DNA序列以及氨基酸序列进行的贝叶斯系统发育分析有力地支持了蜒螺总目和古腹足总目为姐妹类群。