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蜒螺科五种咸淡水物种线粒体基因组的序列比较:系统发育意义及分歧时间估计

Sequence comparison of the mitochondrial genomes of five brackish water species of the family Neritidae: Phylogenetic implications and divergence time estimation.

作者信息

Miao Jing, Feng Jiantong, Liu Xiaojuan, Yan Chengrui, Ye Yingying, Li Jiji, Xu Kaida, Guo Baoying, Lü Zhenming

机构信息

National Engineering Research Center for Facilitated Marine Aquaculture Zhejiang Ocean University Zhoushan China.

Guangdong Provincial Key Laboratory of Marine Biotechnology Shantou University Shantou Guangdong China.

出版信息

Ecol Evol. 2022 Jun 6;12(6):e8984. doi: 10.1002/ece3.8984. eCollection 2022 Jul.

Abstract

Neritids are ancient gastropod species which can live in marine, brackish water, and freshwater environments. In this study, we sequenced and annotated the mitochondrial genomes of five brackish water neritids (i.e., , , , , and ). The mitogenomes ranged from 15,618 to 15,975 bp, and all contain 13 protein-coding genes (PCGs), 22 tRNA genes, and two rRNA genes, with a closed ring structure. We calculated the Ka/Ks values of all 13 PCGs of Neritidae species, all ratios are less than 1, under purification selection. Phylogenetic analysis of the 13 PCGs showed that Neritimorpha is a sister group with Vetigastropoda and Caenogastopoda, genus is a sister group with and . Estimation of divergence time for all species of Neritidae showed that the main differentiation of Neritidae occurred in Cenozoic period (65 Mya), . and . were differentiated in the Cenozoic Neogene, the other three species diverged in the Cenozoic Paleogene. These results will help to better understand the evolutionary position of Neritidae and provide reference for further phylogenetic research on Neritidae species.

摘要

蜒螺科是古老的腹足纲物种,能生活在海洋、咸淡水和淡水环境中。在本研究中,我们对五种咸淡水蜒螺科物种(即 、 、 、 和 )的线粒体基因组进行了测序和注释。线粒体基因组长度在15,618至15,975碱基对之间,均包含13个蛋白质编码基因(PCGs)、22个tRNA基因和两个rRNA基因,呈闭环结构。我们计算了蜒螺科物种所有13个PCGs的Ka/Ks值,所有比值均小于1,处于纯化选择之下。对13个PCGs的系统发育分析表明,蜒螺目是与古腹足目和新腹足目的姐妹群, 属是与 属和 属的姐妹群。对蜒螺科所有物种的分歧时间估计表明,蜒螺科的主要分化发生在新生代(6500万年前), 、 和 在新生代新近纪分化,其他三个物种在新生代古近纪分化。这些结果将有助于更好地了解蜒螺科的进化地位,并为蜒螺科物种的进一步系统发育研究提供参考。

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