Minato Yusuke, Fassio Sara R, Kirkwood Jay S, Halang Petra, Quinn Matthew J, Faulkner Wyatt J, Aagesen Alisha M, Steuber Julia, Stevens Jan F, Häse Claudia C
Department of Biomedical Sciences, College of Veterinary Medicine, Oregon State University, Corvallis, Oregon, United States of America.
Department of Microbiology, College of Science, Oregon State University, Corvallis, Oregon, United States of America.
PLoS One. 2014 May 8;9(5):e97083. doi: 10.1371/journal.pone.0097083. eCollection 2014.
The Na+ translocating NADH:quinone oxidoreductase (Na+-NQR) is a unique respiratory enzyme catalyzing the electron transfer from NADH to quinone coupled with the translocation of sodium ions across the membrane. Typically, Vibrio spp., including Vibrio cholerae, have this enzyme but lack the proton-pumping NADH:ubiquinone oxidoreductase (Complex I). Thus, Na+-NQR should significantly contribute to multiple aspects of V. cholerae physiology; however, no detailed characterization of this aspect has been reported so far. In this study, we broadly investigated the effects of loss of Na+-NQR on V. cholerae physiology by using Phenotype Microarray (Biolog), transcriptome and metabolomics analyses. We found that the V. cholerae ΔnqrA-F mutant showed multiple defects in metabolism detected by Phenotype Microarray. Transcriptome analysis revealed that the V. cholerae ΔnqrA-F mutant up-regulates 31 genes and down-regulates 55 genes in both early and mid-growth phases. The most up-regulated genes included the cadA and cadB genes, encoding a lysine decarboxylase and a lysine/cadaverine antiporter, respectively. Increased CadAB activity was further suggested by the metabolomics analysis. The down-regulated genes include sialic acid catabolism genes. Metabolomic analysis also suggested increased reductive pathway of TCA cycle and decreased purine metabolism in the V. cholerae ΔnqrA-F mutant. Lack of Na+-NQR did not affect any of the Na+ pumping-related phenotypes of V. cholerae suggesting that other secondary Na+ pump(s) can compensate for Na+ pumping activity of Na+-NQR. Overall, our study provides important insights into the contribution of Na+-NQR to V. cholerae physiology.
钠转运型NADH:醌氧化还原酶(Na⁺-NQR)是一种独特的呼吸酶,催化电子从NADH转移至醌,同时伴随着钠离子跨膜转运。通常,包括霍乱弧菌在内的弧菌属细菌拥有这种酶,但缺乏质子泵型NADH:泛醌氧化还原酶(复合体I)。因此,Na⁺-NQR应该对霍乱弧菌的生理机能的多个方面有显著贡献;然而,到目前为止尚未有关于这方面的详细特征描述。在本研究中,我们通过表型芯片(Biolog)、转录组和代谢组分析,广泛研究了Na⁺-NQR缺失对霍乱弧菌生理机能的影响。我们发现,霍乱弧菌ΔnqrA-F突变体在表型芯片检测中显示出多种代谢缺陷。转录组分析表明,霍乱弧菌ΔnqrA-F突变体在生长早期和中期上调了31个基因,下调了55个基因。上调最明显的基因包括分别编码赖氨酸脱羧酶和赖氨酸/尸胺反向转运体的cadA和cadB基因。代谢组分析进一步表明CadAB活性增强。下调的基因包括唾液酸分解代谢基因。代谢组分析还表明,霍乱弧菌ΔnqrA-F突变体中三羧酸循环的还原途径增加,嘌呤代谢减少。Na⁺-NQR的缺失并不影响霍乱弧菌任何与钠泵相关的表型,这表明其他次级钠泵可以补偿Na⁺-NQR的钠泵活性。总体而言,我们的研究为Na⁺-NQR对霍乱弧菌生理机能的贡献提供了重要见解。