Zhang Lei, Zhu Lingfang, Si Meiru, Li Changfu, Zhao Liang, Wei Yahong, Shen Xihui
State Key Laboratory of Crop Stress Biology for Arid Areas and College of Life Sciences, Northwest A&F University, Yangling, 712100, Shaanxi, People's Republic of China.
Antonie Van Leeuwenhoek. 2014 Aug;106(2):279-85. doi: 10.1007/s10482-014-0194-4. Epub 2014 May 21.
A white-coloured bacterium, designated strain GTJR-20(T), was isolated from a stem of Phytolacca acinosa Roxb. collected from Taibai Mountain in Shaanxi Province, north-west China, and was subjected to a taxonomic study by using a polyphasic approach. The novel isolate was found to grow optimally at 28-30 °C, at pH 7.5-8.0 and in the absence of NaCl. Cells were observed to be Gram-stain positive, strictly aerobic, rod-shaped and non-motile. The predominant respiratory quinone was identified as MK-7(H4) and the major cellular fatty acids were identified as iso-C16:0 (35.8 %), C18:1 ω9c (17.7 %), C17:1 ω6c (11.0 %), C17:1 ω8c (7.8 %) and C18:3 ω6c (6, 9, 12) (7.2 %). The DNA G+C content was determined to be 71.6 mol %. Phylogenetic analyses based on 16S rRNA gene sequences showed that strain GTJR-20(T) is a member of the genus Solirubrobacter and is closely related to Solirubrobacter phytolaccae GTGR-8(T) (16S rRNA gene sequence similarity, 98.4 %), Solirubrobacter soli KCTC 12628(T) (97.8 %), Solirubrobacter pauli KCTC 9974(T) (97.7 %) and Solirubrobacter ginsenosidimutans KCTC 19420(T) (97.6 %). No other recognized bacterial species showed more than 94.6 % 16S rRNA gene sequence similarity to the novel isolate. DNA-DNA relatedness values for strain GTJR-20(T) with respect to its closely related neighbours S. phytolaccae GTGR-8(T), S. soli KCTC 12628(T), S. pauli KCTC 9974(T) and S. ginsenosidimutans KCTC 19420(T) were 48.3 ± 8.6, 21.3 ± 5.2, 36.8 ± 6.2 and 36.0 ± 5.5 %, respectively. Based on the phenotypic, phylogenetic and genotypic data, strain GTJR-20(T) is considered to represent a novel species of the genus Solirubrobacter, for which the name Solirubrobacter taibaiensis sp. nov. is proposed. The type strain is GTJR-20(T) (=CCTCC AB 2013308(T) = KCTC 29222(T)).
从中国西北部陕西省太白山采集的商陆茎中分离出一株白色细菌,命名为GTJR-20(T)菌株,并采用多相分类法对其进行分类学研究。发现该新分离菌株在28-30°C、pH 7.5-8.0且无氯化钠的条件下生长最佳。观察到细胞革兰氏染色阳性,严格需氧,杆状且不运动。主要呼吸醌被鉴定为MK-7(H4),主要细胞脂肪酸被鉴定为异C16:0(35.8%)、C18:1 ω9c(17.7%)、C17:1 ω6c(11.0%)、C17:1 ω8c(7.8%)和C18:3 ω6c(6,9,12)(7.2%)。DNA G+C含量测定为71.6 mol%。基于16S rRNA基因序列的系统发育分析表明,GTJR-20(T)菌株是Solirubrobacter属的成员,与商陆Solirubrobacter phytolaccae GTGR-8(T)(16S rRNA基因序列相似性为98.4%)、土壤Solirubrobacter soli KCTC 12628(T)(97.8%)、保罗Solirubrobacter pauli KCTC 9974(T)(97.7%)和人参皂苷转化Solirubrobacter ginsenosidimutans KCTC 19420(T)(97.6%)密切相关。没有其他已确认的细菌物种与该新分离菌株的16S rRNA基因序列相似性超过94.6%。GTJR-20(T)菌株与其密切相关的近缘种商陆S. phytolaccae GTGR-8(T)、土壤S. soli KCTC 12628(T)、保罗S. pauli KCTC 9974(T)和人参皂苷转化S. ginsenosidimutans KCTC 19420(T)的DNA-DNA相关性值分别为48.3±8.6%、21.3±5.2%、36.8±6.2%和36.0±5.5%。基于表型、系统发育和基因型数据,GTJR-20(T)菌株被认为代表Solirubrobacter属的一个新物种,为此提出了太白Solirubrobacter taibaiensis sp. nov.的名称。模式菌株为GTJR-20(T)(=CCTCC AB 2013308(T)=KCTC 29222(T))。