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一种基于定量荧光的 DNA 聚合酶稳态分析检测方法。

A quantitative fluorescence-based steady-state assay of DNA polymerase.

出版信息

FEBS J. 2014 Apr;281(8):2042-50. doi: 10.1111/febs.12760.

Abstract

Fluorescent dyes that bind DNA have been demonstrated as a useful alternative to radionucleotides for the quantification of DNA and the in vitro measurement of the activity of DNA polymerases and nucleases. However, this approach is generally used in a semi-quantitative way to determine relative rates of reaction. In this report, we demonstrate a method for the simultaneous quantification of DNA in both its single-strand and double-strand forms using the dye PicoGreen. This approach is used in a steady-state assay of DNA polymerase Klenow fragment exo(−), where we determine kcat and Km values for the DNA polymerase that are in excellent agreement with literature values.

摘要

荧光染料与 DNA 结合已被证明是放射性核素的一种有用替代品,可用于定量 DNA 以及体外测量 DNA 聚合酶和核酸酶的活性。然而,这种方法通常用于半定量地确定相对反应速率。在本报告中,我们展示了一种使用染料 PicoGreen 同时定量单链和双链 DNA 的方法。该方法用于 Klenow 片段外切酶 DNA 聚合酶 exo(-)的稳态测定,其中我们确定了 DNA 聚合酶的 kcat 和 Km 值,与文献值非常吻合。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9b98/4160019/e5286114549a/febs-281-2042-g01.jpg

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Metal-enhanced PicoGreen fluorescence: application to fast and ultra-sensitive pg/ml DNA quantitation.
J Immunol Methods. 2010 Oct 31;362(1-2):95-100. doi: 10.1016/j.jim.2010.09.011. Epub 2010 Sep 9.
7
Single molecule measurement of the "speed limit" of DNA polymerase.
Proc Natl Acad Sci U S A. 2009 Dec 1;106(48):20294-9. doi: 10.1073/pnas.0907404106. Epub 2009 Nov 11.
8
Metal-enhanced PicoGreen fluorescence: application for double-stranded DNA quantification.
Anal Biochem. 2010 Jan 1;396(1):8-12. doi: 10.1016/j.ab.2009.09.010. Epub 2009 Sep 11.
9
Techniques used to study the DNA polymerase reaction pathway.
Biochim Biophys Acta. 2010 May;1804(5):1032-40. doi: 10.1016/j.bbapap.2009.07.021. Epub 2009 Aug 7.
10
Factors affecting quantification of total DNA by UV spectroscopy and PicoGreen fluorescence.
J Agric Food Chem. 2009 Aug 26;57(16):7221-6. doi: 10.1021/jf901165h.

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