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利用小角散射和标度律探测生物分子的平均局部结构。

Probing the average local structure of biomolecules using small-angle scattering and scaling laws.

机构信息

NIST Center for Neutron Research, National Institute of Standards and Technology, Gaithersburg, Maryland.

出版信息

Biophys J. 2014 Jun 3;106(11):2474-82. doi: 10.1016/j.bpj.2014.03.050.

DOI:10.1016/j.bpj.2014.03.050
PMID:24896127
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4052260/
Abstract

Small-angle neutron and x-ray scattering have become invaluable tools for probing the nanostructure of molecules in solution. It was recently shown that the definite integral of the scattering profile exhibits a scaling (power-law) behavior with respect to molecular mass. We derive the origin of this relationship, and discuss how the integrated scattering profile can be used to identify differing levels of disorder over local ≲30 Å length scales. We apply our analysis to globular and intrinsically disordered proteins.

摘要

小角中子和 X 射线散射已经成为探测溶液中分子纳米结构的非常有价值的工具。最近表明,散射谱的定积分表现出相对于分子质量的标度(幂律)行为。我们推导出这种关系的起源,并讨论如何使用积分散射谱来识别局部 ≲30 Å 长度尺度上不同程度的无序。我们将我们的分析应用于球状和固有无序的蛋白质。

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本文引用的文献

1
Small-angle neutron scattering study of a monoclonal antibody using free-energy constraints.利用自由能约束进行单克隆抗体的小角中子散射研究。
J Phys Chem B. 2013 Nov 14;117(45):14029-38. doi: 10.1021/jp408710r. Epub 2013 Oct 31.
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Accurate assessment of mass, models and resolution by small-angle scattering.小角散射法评估质量、模型和分辨率。
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Polymer scaling laws of unfolded and intrinsically disordered proteins quantified with single-molecule spectroscopy.用单分子光谱法定量研究展开和无规卷曲蛋白质的聚合物标度律。
Proc Natl Acad Sci U S A. 2012 Oct 2;109(40):16155-60. doi: 10.1073/pnas.1207719109. Epub 2012 Sep 14.
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Integrative structural modeling with small angle X-ray scattering profiles.基于小角X射线散射图谱的整合结构建模
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5
How random are intrinsically disordered proteins? A small angle scattering perspective.固有无序蛋白的随机性如何?小角散射视角。
Curr Protein Pept Sci. 2012 Feb;13(1):55-75. doi: 10.2174/138920312799277901.
6
Structural analysis of intrinsically disordered proteins by small-angle X-ray scattering.利用小角X射线散射对内在无序蛋白质进行结构分析。
Mol Biosyst. 2012 Jan;8(1):151-67. doi: 10.1039/c1mb05275f. Epub 2011 Sep 22.
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Characterizing flexible and intrinsically unstructured biological macromolecules by SAS using the Porod-Debye law.运用 Porod-Debye 定律,通过小角散射(SAS)对灵活的、固有无规的生物大分子进行特征描述。
Biopolymers. 2011 Aug;95(8):559-71. doi: 10.1002/bip.21638. Epub 2011 Apr 20.
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Nucleic Acids Res. 2011 May;39(10):4122-35. doi: 10.1093/nar/gkr005. Epub 2011 Jan 29.
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The N(0)-binding region of the vesicular stomatitis virus phosphoprotein is globally disordered but contains transient α-helices.水疱性口炎病毒磷酸蛋白的 N(0)-结合区整体呈无规卷曲,但含有瞬态α-螺旋。
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A series of PDB related databases for everyday needs.一系列满足日常需求的与蛋白质数据银行(PDB)相关的数据库。
Nucleic Acids Res. 2011 Jan;39(Database issue):D411-9. doi: 10.1093/nar/gkq1105. Epub 2010 Nov 11.