Riback Joshua A, Bowman Micayla A, Zmyslowski Adam M, Knoverek Catherine R, Jumper John M, Hinshaw James R, Kaye Emily B, Freed Karl F, Clark Patricia L, Sosnick Tobin R
Graduate Program in Biophysical Sciences, University of Chicago, Chicago, IL 60637, USA.
Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN 46556, USA.
Science. 2017 Oct 13;358(6360):238-241. doi: 10.1126/science.aan5774.
A substantial fraction of the proteome is intrinsically disordered, and even well-folded proteins adopt non-native geometries during synthesis, folding, transport, and turnover. Characterization of intrinsically disordered proteins (IDPs) is challenging, in part because of a lack of accurate physical models and the difficulty of interpreting experimental results. We have developed a general method to extract the dimensions and solvent quality (self-interactions) of IDPs from a single small-angle x-ray scattering measurement. We applied this procedure to a variety of IDPs and found that even IDPs with low net charge and high hydrophobicity remain highly expanded in water, contrary to the general expectation that protein-like sequences collapse in water. Our results suggest that the unfolded state of most foldable sequences is expanded; we conjecture that this property was selected by evolution to minimize misfolding and aggregation.
蛋白质组中有很大一部分是内在无序的,甚至折叠良好的蛋白质在合成、折叠、运输和周转过程中也会呈现非天然的几何形状。对内在无序蛋白质(IDP)进行表征具有挑战性,部分原因是缺乏精确的物理模型以及难以解释实验结果。我们开发了一种通用方法,可从单次小角X射线散射测量中提取IDP的尺寸和溶剂质量(自相互作用)。我们将此方法应用于多种IDP,发现即使是净电荷低且疏水性高的IDP在水中仍高度伸展,这与一般认为类似蛋白质序列在水中会折叠的预期相反。我们的结果表明,大多数可折叠序列的未折叠状态是伸展的;我们推测这种特性是通过进化选择而来,以尽量减少错误折叠和聚集。