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丁酸单胞菌属新种人和人粪便中分离的丁酸单胞菌属新种,并修订丁酸单胞菌属的描述。

Butyricimonas faecihominis sp. nov. and Butyricimonas paravirosa sp. nov., isolated from human faeces, and emended description of the genus Butyricimonas.

机构信息

Microbe Division/Japan Collection of Microorganisms, RIKEN BioResource Center, Tsukuba, Ibaraki 305-0074, Japan.

Biofermin Kobe Research Institute, Nishi-ku, Kobe 651-2242, Japan.

出版信息

Int J Syst Evol Microbiol. 2014 Sep;64(Pt 9):2992-2997. doi: 10.1099/ijs.0.065318-0. Epub 2014 Jun 5.

Abstract

Two bacterial strains, designated 180-3(T) and 214-4(T), isolated from human faeces were characterized by using a polyphasic taxonomic approach that included analysis of their phenotypic and biochemical features, cellular fatty acid profiles, menaquinone profiles and phylogenetic positions based on 16S rRNA gene sequence analysis. 16S rRNA gene sequence analysis showed that these strains represented members of the genus Butyricimonas. These strains shared 97.9 % 16S rRNA gene sequence similarity with each other and were related to Butyricimonas virosa JCM 15149(T) (97 % sequence similarity) and Butyricimonas synergistica JCM 15148(T) (94-95 %). Although strain 180-3(T) was related to (but distinct from) B. virosa JCM 15149(T) and B. synergistica JCM 15148(T), with hsp60 gene sequence similarities of 89.4 and 84.6 %, respectively, strain 214-4(T) exhibited high hsp60 gene sequence similarity (100 %) with B. virosa JCM 15149(T) and was different from B. synergistica JCM 15148(T) (83.5 %). DNA-DNA hybridization experiments demonstrated a genomic distinction of strains 180-3(T) and 214-4(T) from B. virosa JCM 15149(T) and B. synergistica JCM 15148(T). The strains were obligately anaerobic, non-pigmented, non-spore-forming, non-motile, Gram-stain-negative rods. Growth of the strains was inhibited on medium containing 20 % bile. The two strains produced butyric and isobutyric acids as the end products from glucose, as has been observed in the other two species of the genus Butyricimonas. The major cellular fatty acid of strains 180-3(T) and 214-4(T) was iso-C15 : 0. The major menaquinone of the isolates was MK-10 (>50 %). Strains 180-3(T) and 214-4(T) have DNA G+C contents of 45 mol%. On the basis of these data, strains 180-3(T) and 214-4(T) represent two novel species of the genus Butyricimonas, for which the names Butyricimonas faecihominis sp. nov. and Butyricimonas paravirosa sp. nov., respectively, are proposed. The type strains of B. faecihominis and B. paravirosa are 180-3(T) ( = JCM 18676(T) = CCUG 65562(T)) and 214-4(T) ( = JCM 18677(T) = CCUG 65563(T)), respectively.

摘要

两株细菌菌株,分别命名为 180-3(T) 和 214-4(T),从人粪便中分离出来,采用多相分类方法进行了鉴定,包括表型和生化特征分析、细胞脂肪酸图谱、甲萘醌图谱和基于 16S rRNA 基因序列分析的系统发育位置。16S rRNA 基因序列分析表明,这些菌株代表丁酸单胞菌属的成员。这些菌株彼此之间的 16S rRNA 基因序列相似度为 97.9%,与丁酸单胞菌 JCM 15149(T)(97%序列相似度)和丁酸协同菌 JCM 15148(T)(94-95%)最为相关。尽管菌株 180-3(T)与丁酸单胞菌 JCM 15149(T)和丁酸协同菌 JCM 15148(T)有关(但不同),与 hsp60 基因序列相似度分别为 89.4%和 84.6%,但菌株 214-4(T)与丁酸单胞菌 JCM 15149(T)的 hsp60 基因序列相似度为 100%,与丁酸协同菌 JCM 15148(T)(83.5%)不同。DNA-DNA 杂交实验表明,菌株 180-3(T)和 214-4(T)与丁酸单胞菌 JCM 15149(T)和丁酸协同菌 JCM 15148(T)在基因组上存在区别。这些菌株是专性厌氧、非色素、非孢子形成、非运动、革兰氏阴性棒状菌。这些菌株在含有 20%胆汁的培养基上的生长受到抑制。两种菌株都能将葡萄糖作为终产物产生丁酸和异丁酸,这在丁酸单胞菌属的其他两个种中也有观察到。菌株 180-3(T)和 214-4(T)的主要细胞脂肪酸为 iso-C15:0。分离株的主要甲萘醌为 MK-10(>50%)。菌株 180-3(T)和 214-4(T)的 DNA G+C 含量为 45 mol%。基于这些数据,菌株 180-3(T)和 214-4(T)代表丁酸单胞菌属的两个新种,分别命名为 Faecihominis butyricum sp. nov.和 Paravirosa butyricum sp. nov。丁酸 Faecihominis 和丁酸 Paravirosa 的模式菌株分别为 180-3(T)(=JCM 18676(T)=CCUG 65562(T))和 214-4(T)(=JCM 18677(T)=CCUG 65563(T))。

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