Smidstrup Søren, Pedersen Andreas, Stokbro Kurt, Jónsson Hannes
QuantumWise A/S, Lersø Parkallé 107, DK-2100 Copenhagen, Denmark.
Science Institute and Faculty of Physical Sciences, University of Iceland VR-III, 107 Reykjavík, Iceland.
J Chem Phys. 2014 Jun 7;140(21):214106. doi: 10.1063/1.4878664.
A method is presented for generating a good initial guess of a transition path between given initial and final states of a system without evaluation of the energy. An objective function surface is constructed using an interpolation of pairwise distances at each discretization point along the path and the nudged elastic band method then used to find an optimal path on this image dependent pair potential (IDPP) surface. This provides an initial path for the more computationally intensive calculations of a minimum energy path on an energy surface obtained, for example, by ab initio or density functional theory. The optimal path on the IDPP surface is significantly closer to a minimum energy path than a linear interpolation of the Cartesian coordinates and, therefore, reduces the number of iterations needed to reach convergence and averts divergence in the electronic structure calculations when atoms are brought too close to each other in the initial path. The method is illustrated with three examples: (1) rotation of a methyl group in an ethane molecule, (2) an exchange of atoms in an island on a crystal surface, and (3) an exchange of two Si-atoms in amorphous silicon. In all three cases, the computational effort in finding the minimum energy path with DFT was reduced by a factor ranging from 50% to an order of magnitude by using an IDPP path as the initial path. The time required for parallel computations was reduced even more because of load imbalance when linear interpolation of Cartesian coordinates was used.
本文提出了一种方法,用于在不评估能量的情况下,生成系统给定初始状态和最终状态之间过渡路径的良好初始猜测。通过对沿路径的每个离散点处的成对距离进行插值来构建目标函数曲面,然后使用推挤弹性带方法在该图像依赖对势(IDPP)曲面上找到最优路径。这为例如通过从头算或密度泛函理论获得的能量表面上的最小能量路径的更计算密集型计算提供了初始路径。IDPP曲面上的最优路径比笛卡尔坐标的线性插值更接近最小能量路径,因此减少了达到收敛所需的迭代次数,并避免了在初始路径中原子彼此过于靠近时电子结构计算中的发散。该方法通过三个例子进行说明:(1)乙烷分子中甲基的旋转,(2)晶体表面岛屿中原子的交换,以及(3)非晶硅中两个硅原子的交换。在所有三种情况下,通过使用IDPP路径作为初始路径,使用DFT找到最小能量路径的计算工作量减少了50%到一个数量级。由于使用笛卡尔坐标的线性插值时存在负载不平衡,并行计算所需的时间减少得更多。