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在蛋白质晶体学站对大肠杆菌ABC转运受体磷酸结合蛋白进行的初步飞行时间中子衍射研究。

Preliminary time-of-flight neutron diffraction studies of Escherichia coli ABC transport receptor phosphate-binding protein at the Protein Crystallography Station.

作者信息

Sippel K H, Bacik J, Quiocho F A, Fisher S Z

机构信息

Verna and Marrs McLean Department of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, TX 77030, USA.

Bioscience Division B-11, Los Alamos National Laboratory, Los Alamos, NM 87545, USA.

出版信息

Acta Crystallogr F Struct Biol Commun. 2014 Jun;70(Pt 6):819-22. doi: 10.1107/S2053230X14009704. Epub 2014 May 25.

DOI:10.1107/S2053230X14009704
PMID:24915101
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4051545/
Abstract

Inorganic phosphate is an essential molecule for all known life. Organisms have developed many mechanisms to ensure an adequate supply, even in low-phosphate conditions. In prokaryotes phosphate transport is instigated by the phosphate-binding protein (PBP), the initial receptor for the ATP-binding cassette (ABC) phosphate transporter. In the crystal structure of the PBP-phosphate complex, the phosphate is completely desolvated and sequestered in a deep cleft and is bound by 13 hydrogen bonds: 12 to protein NH and OH donor groups and one to a carboxylate acceptor group. The carboxylate plays a key recognition role by accepting a phosphate hydrogen. PBP phosphate affinity is relatively consistent across a broad pH range, indicating the capacity to bind monobasic (H2PO4-) and dibasic (HPO4(2-)) phosphate; however, the mechanism by which it might accommodate the second hydrogen of monobasic phosphate is unclear. To answer this question, neutron diffraction studies were initiated. Large single crystals with a volume of 8 mm3 were grown and subjected to hydrogen/deuterium exchange. A 2.5 Å resolution data set was collected on the Protein Crystallography Station at the Los Alamos Neutron Science Center. Initial refinement of the neutron data shows significant nuclear density, and refinement is ongoing. This is the first report of a neutron study from this superfamily.

摘要

无机磷酸盐是所有已知生命所必需的分子。即使在低磷酸盐条件下,生物体也已发展出多种机制来确保充足的供应。在原核生物中,磷酸盐转运由磷酸盐结合蛋白(PBP)启动,它是ATP结合盒(ABC)磷酸盐转运体的初始受体。在PBP - 磷酸盐复合物的晶体结构中,磷酸盐完全去溶剂化并被隔离在一个深裂缝中,由13个氢键结合:12个与蛋白质的NH和OH供体基团结合,1个与羧酸盐受体基团结合。羧酸盐通过接受磷酸盐氢发挥关键的识别作用。PBP对磷酸盐的亲和力在很宽的pH范围内相对一致,表明它有能力结合一价(H2PO4-)和二价(HPO4(2-))磷酸盐;然而,它容纳一价磷酸盐第二个氢的机制尚不清楚。为了回答这个问题,启动了中子衍射研究。生长出了体积为8 mm3的大单晶,并进行了氢/氘交换。在洛斯阿拉莫斯中子科学中心的蛋白质晶体学站收集了分辨率为2.5 Å的数据集。中子数据的初步精修显示出明显的核密度,精修工作正在进行。这是关于这个超家族中子研究的首次报告。