Suppr超能文献

粘着斑周转分析:一个定量活细胞成像示例

Analysis of focal adhesion turnover: a quantitative live-cell imaging example.

作者信息

Stehbens Samantha J, Wittmann Torsten

机构信息

Institute of Health Biomedical Innovation (IHBI), Queensland University of Technology Translational Research Institute, Brisbane, Queensland, Australia.

Department of Cell and Tissue Biology, University of California, San Francisco, USA.

出版信息

Methods Cell Biol. 2014;123:335-46. doi: 10.1016/B978-0-12-420138-5.00018-5.

Abstract

Recent advances in optical and fluorescent protein technology have rapidly raised expectations in cell biology, allowing quantitative insights into dynamic intracellular processes like never before. However, quantitative live-cell imaging comes with many challenges including how best to translate dynamic microscopy data into numerical outputs that can be used to make meaningful comparisons rather than relying on representative data sets. Here, we use analysis of focal adhesion turnover dynamics as a straightforward specific example on how to image, measure, and analyze intracellular protein dynamics, but we believe this outlines a thought process and can provide guidance on how to understand dynamic microcopy data of other intracellular structures.

摘要

光学和荧光蛋白技术的最新进展迅速提升了细胞生物学领域的期望,使人们能够以前所未有的方式对细胞内动态过程进行定量洞察。然而,定量活细胞成像面临诸多挑战,包括如何将动态显微镜数据转化为可用于进行有意义比较的数值输出,而不是依赖代表性数据集。在此,我们以粘着斑周转动力学分析为例,直观地说明如何对细胞内蛋白质动力学进行成像、测量和分析,但我们认为这勾勒出了一种思维过程,并可为理解其他细胞内结构的动态显微镜数据提供指导。

相似文献

1
Analysis of focal adhesion turnover: a quantitative live-cell imaging example.
Methods Cell Biol. 2014;123:335-46. doi: 10.1016/B978-0-12-420138-5.00018-5.
3
Insights into adhesion biology using single-molecule localization microscopy.
Chemphyschem. 2014 Mar 17;15(4):606-18. doi: 10.1002/cphc.201301041. Epub 2014 Feb 4.
4
Imaging intracellular protein dynamics by spinning disk confocal microscopy.
Methods Enzymol. 2012;504:293-313. doi: 10.1016/B978-0-12-391857-4.00015-X.
5
Quantitative imaging of focal adhesion dynamics and their regulation by HGF and Rap1 signaling.
Exp Cell Res. 2015 Jan 15;330(2):382-397. doi: 10.1016/j.yexcr.2014.10.012. Epub 2014 Oct 31.
7
Fluorescence live cell imaging.
Methods Cell Biol. 2014;123:77-94. doi: 10.1016/B978-0-12-420138-5.00005-7.
8
Quantitative mapping of averaged focal adhesion dynamics in migrating cells by shape normalization.
J Cell Sci. 2012 Jan 1;125(Pt 1):155-65. doi: 10.1242/jcs.090746. Epub 2012 Jan 16.
9
Structured illumination microscopy reveals focal adhesions are composed of linear subunits.
Cytoskeleton (Hoboken). 2015 May;72(5):235-45. doi: 10.1002/cm.21223.

引用本文的文献

2
Differential PaxillinB dynamics at cell-substrate adhesions.
bioRxiv. 2025 Aug 6:2025.08.04.668536. doi: 10.1101/2025.08.04.668536.
4
MYO18B promotes lysosomal exocytosis by facilitating focal adhesion maturation.
J Cell Biol. 2025 Mar 3;224(3). doi: 10.1083/jcb.202407068. Epub 2025 Jan 3.
5
Decisive role of mDia-family formins in cell cortex function of highly adherent cells.
Sci Adv. 2024 Nov;10(44):eadp5929. doi: 10.1126/sciadv.adp5929. Epub 2024 Oct 30.
6
Physical aspects of epithelial cell-cell interactions: hidden system complexities.
Eur Biophys J. 2024 Nov;53(7-8):355-372. doi: 10.1007/s00249-024-01721-z. Epub 2024 Sep 10.
7
Epithelial cell-cell interactions in an overcrowded environment: jamming or live cell extrusion.
J Biol Eng. 2024 Sep 5;18(1):47. doi: 10.1186/s13036-024-00442-3.
8
YAP phosphorylation within integrin adhesions: Insights from a computational model.
Biophys J. 2024 Nov 5;123(21):3658-3668. doi: 10.1016/j.bpj.2024.09.002. Epub 2024 Sep 3.
9
Reduced PaxillinB localization to cell-substrate adhesions promotes cell migration in .
bioRxiv. 2024 Mar 22:2024.03.19.585764. doi: 10.1101/2024.03.19.585764.

本文引用的文献

1
BoxPlotR: a web tool for generation of box plots.
Nat Methods. 2014 Feb;11(2):121-2. doi: 10.1038/nmeth.2811.
2
Targeting and transport: how microtubules control focal adhesion dynamics.
J Cell Biol. 2012 Aug 20;198(4):481-9. doi: 10.1083/jcb.201206050.
3
EB1-recruited microtubule +TIP complexes coordinate protrusion dynamics during 3D epithelial remodeling.
Curr Biol. 2012 May 8;22(9):753-62. doi: 10.1016/j.cub.2012.02.069. Epub 2012 Apr 5.
4
Imaging intracellular protein dynamics by spinning disk confocal microscopy.
Methods Enzymol. 2012;504:293-313. doi: 10.1016/B978-0-12-391857-4.00015-X.
5
High-resolution quantification of focal adhesion spatiotemporal dynamics in living cells.
PLoS One. 2011;6(7):e22025. doi: 10.1371/journal.pone.0022025. Epub 2011 Jul 14.
6
Reducing background fluorescence reveals adhesions in 3D matrices.
Nat Cell Biol. 2011 Jan;13(1):3-5; author reply 5-7. doi: 10.1038/ncb0111-3.
7
Nanoscale architecture of integrin-based cell adhesions.
Nature. 2010 Nov 25;468(7323):580-4. doi: 10.1038/nature09621.
9
Cell adhesion: integrating cytoskeletal dynamics and cellular tension.
Nat Rev Mol Cell Biol. 2010 Sep;11(9):633-43. doi: 10.1038/nrm2957.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验