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核糖体循环在核糖体可用性较低时诱导最佳翻译速率。

Ribosome recycling induces optimal translation rate at low ribosomal availability.

作者信息

Marshall E, Stansfield I, Romano M C

机构信息

Institute of Medical Sciences, University of Aberdeen, Foresterhill, Aberdeen AB25 2ZD, UK SUPA, Institute for Complex Systems and Mathematical Biology, King's College, University of Aberdeen, Aberdeen AB24 3UE, UK

Institute of Medical Sciences, University of Aberdeen, Foresterhill, Aberdeen AB25 2ZD, UK.

出版信息

J R Soc Interface. 2014 Sep 6;11(98):20140589. doi: 10.1098/rsif.2014.0589.

DOI:10.1098/rsif.2014.0589
PMID:25008084
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4233708/
Abstract

During eukaryotic cellular protein synthesis, ribosomal translation is made more efficient through interaction between the two ends of the messenger RNA (mRNA). Ribosomes reaching the 3' end of the mRNA can thus recycle and begin translation again on the same mRNA, the so-called 'closed-loop' model. Using a driven diffusion lattice model of translation, we study the effects of ribosome recycling on the dynamics of ribosome flow and density on the mRNA. We show that ribosome recycling induces a substantial increase in ribosome current. Furthermore, for sufficiently large values of the recycling rate, the lattice does not transition directly from low to high ribosome density, as seen in lattice models without recycling. Instead, a maximal current phase becomes accessible for much lower values of the initiation rate, and multiple phase transitions occur over a wide region of the phase plane. Crucially, we show that in the presence of ribosome recycling, mRNAs can exhibit a peak in protein production at low values of the initiation rate, beyond which translation rate decreases. This has important implications for translation of certain mRNAs, suggesting that there is an optimal concentration of ribosomes at which protein synthesis is maximal, and beyond which translational efficiency is impaired.

摘要

在真核细胞蛋白质合成过程中,信使核糖核酸(mRNA)两端的相互作用可提高核糖体翻译的效率。因此,到达mRNA 3'端的核糖体能够循环利用,并在同一mRNA上再次开始翻译,即所谓的“闭环”模型。我们使用翻译的驱动扩散晶格模型,研究核糖体循环利用对mRNA上核糖体流动动力学和密度的影响。我们发现,核糖体循环利用会使核糖体电流大幅增加。此外,对于足够大的循环利用率,晶格不会像无循环利用的晶格模型那样直接从低核糖体密度转变为高核糖体密度。相反,对于低得多的起始速率值,会出现一个最大电流阶段,并且在相平面的广泛区域内会发生多次相变。至关重要的是,我们表明在存在核糖体循环利用的情况下,mRNA在低起始速率值时蛋白质产量会出现峰值,超过该值翻译速率会下降。这对某些mRNA的翻译具有重要意义,表明存在一个核糖体的最佳浓度,此时蛋白质合成最大,超过该浓度翻译效率会受损。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5938/4233708/c45b5fe14620/rsif20140589-g6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5938/4233708/d8246b2e6a63/rsif20140589-g1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5938/4233708/adb24d2575f5/rsif20140589-g2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5938/4233708/4738493b559d/rsif20140589-g3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5938/4233708/9ac6f561245e/rsif20140589-g4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5938/4233708/6256eebcd698/rsif20140589-g5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5938/4233708/c45b5fe14620/rsif20140589-g6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5938/4233708/d8246b2e6a63/rsif20140589-g1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5938/4233708/adb24d2575f5/rsif20140589-g2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5938/4233708/4738493b559d/rsif20140589-g3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5938/4233708/9ac6f561245e/rsif20140589-g4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5938/4233708/6256eebcd698/rsif20140589-g5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5938/4233708/c45b5fe14620/rsif20140589-g6.jpg

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