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Idiomarina planktonica sp. nov.,从盐湖中分离得到。

Idiomarina planktonica sp. nov., isolated from a saline lake.

机构信息

University of Chinese Academy of Sciences, Beijing 100049, PR China.

State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, PR China.

出版信息

Int J Syst Evol Microbiol. 2014 Oct;64(Pt 10):3411-3416. doi: 10.1099/ijs.0.065938-0. Epub 2014 Jul 11.

Abstract

A Gram-stain-negative bacterium, strain TS-T11(T), was isolated from Tuosu lake, a saline lake (salinity 5.4%, w/v) in the Qaidam basin, Qinghai province, China. Its taxonomic position was determined by using a polyphasic approach. Cells of strain TS-T11(T) were non-spore-forming rods, 0.6-0.8 µm wide and 0.8-2.2 µm long, and motile by means of a single polar flagellum. Strain TS-T11(T) was strictly heterotrophic and aerobic. Cells were positive for catalase and oxidase. Growth was observed in the presence of 0.5-11.0% (w/v) NaCl (optimum 4.0-6.0%), at 4-40 °C (optimum 30-35 °C) and at pH 6.0-10.5 (optimum pH 7.5-8.5). Strain TS-T11(T) contained iso-C15:0, iso-C17:0 and iso-C17:1ω9c as the predominant fatty acids (>10%). The major respiratory quinone was Q-8. The polar lipids consisted of a mixture of phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol and nine uncharacterized phospholipids. The G+C content of genomic DNA was 46.8 mol% (Tm). Phylogenetic trees based on 16S rRNA gene sequences showed that strain TS-T11(T) was associated with the genus Idiomarina, and showed highest 16S rRNA gene sequence similarity to Idiomarina aestuarii KYW314(T) (97.4%) and Idiomarina salinarum ISL-52(T) (97.4%). DNA-DNA relatedness of strain TS-T11(T) to I. aestuarii JCM 16344(T) and I. salinarum DSM 21900(T) was 22.2 ± 2.4 and 11.5 ± 1.6%, respectively. Based on the data presented above, it was concluded that strain TS-T11(T) represents a novel species of the genus Idiomarina, for which the name Idiomarina planktonica sp. nov. is proposed. The type strain is TS-T11(T) ( = CGMCC 1.12458(T) = JCM 19263(T)).

摘要

一株革兰氏阴性细菌,菌株 TS-T11(T),从中国青海省柴达木盆地的托素湖(盐度 5.4%,w/v)中分离得到。其分类地位通过多相研究确定。菌株 TS-T11(T)的细胞为非孢子形成的杆状,宽 0.6-0.8 µm,长 0.8-2.2 µm,通过单一极鞭毛运动。菌株 TS-T11(T)严格异养和需氧。细胞呈过氧化氢酶和氧化酶阳性。在 0.5-11.0%(w/v)NaCl(最佳 4.0-6.0%)、4-40°C(最佳 30-35°C)和 pH 6.0-10.5(最佳 pH 7.5-8.5)的条件下可观察到生长。菌株 TS-T11(T)含有 iso-C15:0、iso-C17:0 和 iso-C17:1ω9c 作为主要脂肪酸(>10%)。主要呼吸醌为 Q-8。极性脂由磷脂酰乙醇胺、磷脂酰甘油、双磷脂酰甘油和 9 种未鉴定的磷脂组成。基因组 DNA 的 G+C 含量为 46.8 mol%(Tm)。基于 16S rRNA 基因序列的系统发育树显示,菌株 TS-T11(T)与 Idiomarina 属有关,与 Idiomarina aestuarii KYW314(T)(97.4%)和 Idiomarina salinarum ISL-52(T)(97.4%)的 16S rRNA 基因序列相似度最高。菌株 TS-T11(T)与 Idiomarina aestuarii JCM 16344(T)和 Idiomarina salinarum DSM 21900(T)的 DNA-DNA 相关度分别为 22.2±2.4%和 11.5±1.6%。基于上述数据,结论是菌株 TS-T11(T)代表 Idiomarina 属的一个新种,命名为 Idiomarina planktonica sp. nov.。模式菌株为 TS-T11(T)(=CGMCC 1.12458(T)=JCM 19263(T))。

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