两株海洋光合细菌——长红杆菌DSM 6997菌株和滨红杆菌DSM 8509菌株的基因组序列草图
Draft Genome Sequences of Two Marine Phototrophic Bacteria, Erythrobacter longus Strain DSM 6997 and Erythrobacter litoralis Strain DSM 8509.
作者信息
Wang Yu, Zhang Rui, Zheng Qiang, Jiao Nianzhi
机构信息
State Key Laboratory of Marine Environmental Science, Institute of Marine Microbes and Ecospheres, Xiamen University, Xiamen, People's Republic of China.
State Key Laboratory of Marine Environmental Science, Institute of Marine Microbes and Ecospheres, Xiamen University, Xiamen, People's Republic of China
出版信息
Genome Announc. 2014 Jul 24;2(4):e00677-14. doi: 10.1128/genomeA.00677-14.
Abstract
Aerobic anoxygenic phototrophic bacteria (AAPB) are important functional groups and are widely distributed in the global upper ocean. Here we report the draft genomic sequences of two marine AAPB isolates belonging to the genus Erythrobacter, Erythrobacter longus strain DSM 6997 and Erythrobacter litoralis strain DSM 8509.
摘要
好氧不产氧光合细菌（AAPB）是重要的功能菌群，广泛分布于全球海洋上层。在此，我们报告了两株属于赤杆菌属的海洋AAPB分离株的基因组序列草图，即长赤杆菌DSM 6997菌株和滨海赤杆菌DSM 8509菌株。
相似文献
1
Draft Genome Sequences of Two Marine Phototrophic Bacteria, Erythrobacter longus Strain DSM 6997 and Erythrobacter litoralis Strain DSM 8509.
Genome Announc. 2014 Jul 24;2(4):e00677-14. doi: 10.1128/genomeA.00677-14.
2
A Comparison of 14 Erythrobacter Genomes Provides Insights into the Genomic Divergence and Scattered Distribution of Phototrophs.
Front Microbiol. 2016 Jun 24;7:984. doi: 10.3389/fmicb.2016.00984. eCollection 2016.
3
Aerobic Anoxygenic Phototrophic Bacteria in the Marine Environments Revealed by Raman/Fluorescence-Guided Single-Cell Sorting and Targeted Metagenomics.
Environ Sci Technol. 2024 Apr 23;58(16):7087-7098. doi: 10.1021/acs.est.4c02881. Epub 2024 Apr 11.
4
Pyrosequencing analysis of aerobic anoxygenic phototrophic bacterial community structure in the oligotrophic western Pacific Ocean.
FEMS Microbiol Lett. 2015 Apr;362(8):fnv034. doi: 10.1093/femsle/fnv034. Epub 2015 Feb 26.
5
Isolation and characterization of the first phage infecting ecologically important marine bacteria Erythrobacter.
Virol J. 2017 Jun 7;14(1):104. doi: 10.1186/s12985-017-0773-x.
6
Genome sequence of aerobic anoxygenic phototrophic bacterium Erythrobacter sp. JL475, isolated from the South China Sea.
Mar Genomics. 2015 Jun;21:15-6. doi: 10.1016/j.margen.2015.02.006. Epub 2015 Feb 17.
7
Formation of polyhydroxyalkanoate in aerobic anoxygenic phototrophic bacteria and its relationship to carbon source and light availability.
Appl Environ Microbiol. 2011 Nov;77(21):7445-50. doi: 10.1128/AEM.05955-11. Epub 2011 Sep 9.
8
Complete genome sequence of Erythrobacter litoralis HTCC2594.
J Bacteriol. 2009 Apr;191(7):2419-20. doi: 10.1128/JB.00026-09. Epub 2009 Jan 23.
9
Distinct distribution pattern of abundance and diversity of aerobic anoxygenic phototrophic bacteria in the global ocean.
Environ Microbiol. 2007 Dec;9(12):3091-9. doi: 10.1111/j.1462-2920.2007.01419.x.
10
Photosynthetic characteristics of marine aerobic anoxygenic phototrophic bacteria Roseobacter and Erythrobacter strains.
Arch Microbiol. 2012 May;194(5):331-41. doi: 10.1007/s00203-011-0761-2. Epub 2011 Oct 28.
引用本文的文献
1
Complex Evolution of Light-Dependent Protochlorophyllide Oxidoreductases in Aerobic Anoxygenic Phototrophs: Origin, Phylogeny, and Function.
Mol Biol Evol. 2021 Mar 9;38(3):819-837. doi: 10.1093/molbev/msaa234.
2
Genomic-based taxonomic classification of the family .
Int J Syst Evol Microbiol. 2020 Aug;70(8):4470-4495. doi: 10.1099/ijsem.0.004293. Epub 2020 Jul 29.
3
Regulation of the Erythrobacter litoralis DSM 8509 general stress response by visible light.
Mol Microbiol. 2019 Aug;112(2):442-460. doi: 10.1111/mmi.14310. Epub 2019 Jun 7.
4
Complete Genome Sequence of the Marine Carbazole-Degrading Bacterium Erythrobacter sp. Strain KY5.
Microbiol Resour Announc. 2018 Aug 30;7(8). doi: 10.1128/MRA.00935-18. eCollection 2018 Aug.
本文引用的文献
1
CDD: conserved domains and protein three-dimensional structure.
Nucleic Acids Res. 2013 Jan;41(Database issue):D348-52. doi: 10.1093/nar/gks1243. Epub 2012 Nov 28.
2
The KEGG databases and tools facilitating omics analysis: latest developments involving human diseases and pharmaceuticals.
Methods Mol Biol. 2012;802:19-39. doi: 10.1007/978-1-61779-400-1_2.
3
Genome sequence of the marine photoheterotrophic bacterium Erythrobacter sp. strain NAP1.
J Bacteriol. 2011 Oct;193(20):5881-2. doi: 10.1128/JB.05845-11.
4
Formation of polyhydroxyalkanoate in aerobic anoxygenic phototrophic bacteria and its relationship to carbon source and light availability.
Appl Environ Microbiol. 2011 Nov;77(21):7445-50. doi: 10.1128/AEM.05955-11. Epub 2011 Sep 9.
5
Velvet: algorithms for de novo short read assembly using de Bruijn graphs.
Genome Res. 2008 May;18(5):821-9. doi: 10.1101/gr.074492.107. Epub 2008 Mar 18.
6
KAAS: an automatic genome annotation and pathway reconstruction server.
Nucleic Acids Res. 2007 Jul;35(Web Server issue):W182-5. doi: 10.1093/nar/gkm321. Epub 2007 May 25.
7
RNAmmer: consistent and rapid annotation of ribosomal RNA genes.
Nucleic Acids Res. 2007;35(9):3100-8. doi: 10.1093/nar/gkm160. Epub 2007 Apr 22.
8
Distribution and physiology of aerobic bacteria containing bacteriochlorophyll a on the East and west coasts of australia.
Appl Environ Microbiol. 1991 Jan;57(1):295-300. doi: 10.1128/aem.57.1.295-300.1991.
9
Porphyrobacter cryptus sp. nov., a novel slightly thermophilic, aerobic, bacteriochlorophyll a-containing species.
Int J Syst Evol Microbiol. 2003 Jan;53(Pt 1):35-41. doi: 10.1099/ijs.0.02308-0.
10
Contribution of aerobic photoheterotrophic bacteria to the carbon cycle in the ocean.
Science. 2001 Jun 29;292(5526):2492-5. doi: 10.1126/science.1059707.
Zotero 插件