Linshiz Gregory, Stawski Nina, Goyal Garima, Bi Changhao, Poust Sean, Sharma Monica, Mutalik Vivek, Keasling Jay D, Hillson Nathan J
Fuels Synthesis Division, Joint BioEnergy Institute , Emeryville, California 94608, United States.
ACS Synth Biol. 2014 Aug 15;3(8):515-24. doi: 10.1021/sb4001728. Epub 2014 Jan 14.
To enable protocol standardization, sharing, and efficient implementation across laboratory automation platforms, we have further developed the PR-PR open-source high-level biology-friendly robot programming language as a cross-platform laboratory automation system. Beyond liquid-handling robotics, PR-PR now supports microfluidic and microscopy platforms, as well as protocol translation into human languages, such as English. While the same set of basic PR-PR commands and features are available for each supported platform, the underlying optimization and translation modules vary from platform to platform. Here, we describe these further developments to PR-PR, and demonstrate the experimental implementation and validation of PR-PR protocols for combinatorial modified Golden Gate DNA assembly across liquid-handling robotic, microfluidic, and manual platforms. To further test PR-PR cross-platform performance, we then implement and assess PR-PR protocols for Kunkel DNA mutagenesis and hierarchical Gibson DNA assembly for microfluidic and manual platforms.
为了实现跨实验室自动化平台的协议标准化、共享和高效实施,我们进一步开发了PR-PR开源高级生物友好型机器人编程语言,作为一个跨平台实验室自动化系统。除了液体处理机器人技术,PR-PR现在还支持微流体和显微镜平台,以及将协议翻译成人类语言,如英语。虽然每组基本的PR-PR命令和功能在每个支持的平台上都可用,但底层的优化和翻译模块因平台而异。在这里,我们描述了PR-PR的这些进一步发展,并展示了PR-PR协议在液体处理机器人、微流体和手动平台上进行组合修饰的金门DNA组装的实验实施和验证。为了进一步测试PR-PR的跨平台性能,我们随后在微流体和手动平台上实施并评估了用于Kunkel DNA诱变和分层吉布森DNA组装的PR-PR协议。