LINEs and SINEs of primate evolution.
作者信息
Konkel Miriam K, Walker Jerilyn A, Batzer Mark A
机构信息
Department of Biological Sciences, Louisiana State University, 202 Life Sciences Bldg., Baton Rouge, LA 70803, USA.
出版信息
Evol Anthropol. 2010 Nov 1;19(6):236-249. doi: 10.1002/evan.20283.
Abstract
摘要
相似文献
1
LINEs and SINEs of primate evolution.灵长类进化中的长散在重复序列和短散在重复序列。
Evol Anthropol. 2010 Nov 1;19(6):236-249. doi: 10.1002/evan.20283.
2
Diversity of short interspersed nuclear elements (SINEs) in lepidopteran insects and evidence of horizontal SINE transfer between baculovirus and lepidopteran hosts.鳞翅目昆虫中短散在核元件（SINEs）的多样性以及杆状病毒与鳞翅目宿主之间水平SINE转移的证据。
BMC Genomics. 2021 Mar 31;22(1):226. doi: 10.1186/s12864-021-07543-z.
3
The Evolution of SINEs and LINEs in the genus Chironomus (Diptera).摇蚊属（双翅目）中短散在重复序列（SINEs）和长散在重复序列（LINEs）的进化
J Mol Evol. 2004 Mar;58(3):269-79. doi: 10.1007/s00239-003-2549-8.
4
Hagfish genome reveals parallel evolution of 7SL RNA-derived SINEs.盲鳗基因组揭示了7SL RNA衍生的短散在重复序列的平行进化。
Mob DNA. 2020 May 22;11:18. doi: 10.1186/s13100-020-00210-2. eCollection 2020.
5
Mobile Element Evolution Playing Jigsaw - SINEs in Gastropod and Bivalve Mollusks.移动元件进化之拼图游戏——腹足纲和双壳纲软体动物中的短散在重复序列
Genome Biol Evol. 2016 Jan 6;8(1):253-70. doi: 10.1093/gbe/evv257.
6
Carnivore-specific SINEs (Can-SINEs): distribution, evolution, and genomic impact.专性肉食动物 SINEs（Can-SINEs）：分布、进化和基因组影响。
J Hered. 2011 Sep-Oct;102 Suppl 1(Suppl 1):S2-10. doi: 10.1093/jhered/esr051.
7
Diversification, evolution and methylation of short interspersed nuclear element families in sugar beet and related Amaranthaceae species.甜菜及相关苋科物种中短散在核元件家族的多样化、进化与甲基化
Plant J. 2016 Jan;85(2):229-44. doi: 10.1111/tpj.13103.
8
Short interspersed elements (SINEs) in plants: origin, classification, and use as phylogenetic markers.植物中的短散在元件（SINEs）：起源、分类及其作为系统发育标记的应用
Syst Biol. 2006 Dec;55(6):949-56. doi: 10.1080/10635150601047843.
9
Retropositional parasitism of SINEs on LINEs: identification of SINEs and LINEs in elasmobranchs.短散在重复元件（SINEs）在长散在重复元件（LINEs）上的逆转座寄生现象：软骨鱼类中SINEs和LINEs的鉴定
Mol Biol Evol. 1999 Sep;16(9):1238-50. doi: 10.1093/oxfordjournals.molbev.a026214.
10
SINE Retrotransposition: Evaluation of Alu Activity and Recovery of De Novo Inserts.短散在重复序列逆转座：Alu活性评估及新生插入序列的恢复
Methods Mol Biol. 2016;1400:183-201. doi: 10.1007/978-1-4939-3372-3_13.
引用本文的文献
1
Identification and Characterization of LINE and SINE Retrotransposons in the African Hedgehog (, ) and Their Association with 3D Genome Organization and Gene Expression.非洲刺猬中LINE和SINE逆转座子的鉴定与表征及其与三维基因组组织和基因表达的关联。
Genes (Basel). 2025 Mar 29;16(4):397. doi: 10.3390/genes16040397.
2
Inverted Alu repeats in loop-out exon skipping across hominoid evolution.在类人猿进化过程中，倒位的Alu重复序列在环出外显子跳跃中发挥作用。
bioRxiv. 2025 Mar 10:2025.03.07.642063. doi: 10.1101/2025.03.07.642063.
3
Association of a 7.9 kb Endogenous Retrovirus Insertion in Intron 1 of CD36 with Obesity and Fat Measurements in Sheep.绵羊中 CD36 基因内含子 1 中 7.9 kb 内源性逆转录病毒插入与肥胖及脂肪测量的关联
Mob DNA. 2025 Mar 14;16(1):12. doi: 10.1186/s13100-025-00349-w.
4
Alu-Sc-mediated exonization generated a mitochondrial LKB1 gene variant found only in higher order primates.Alu-Sc介导的外显子化产生了一种仅在高等灵长类动物中发现的线粒体LKB1基因变体。
Sci Rep. 2025 Jan 27;15(1):3360. doi: 10.1038/s41598-025-86789-z.
5
The reconstruction of evolutionary dynamics of processed pseudogenes indicates deep silencing of "retrobiome" in naked mole rat.加工假基因进化动力学的重建表明裸鼹鼠“返生生物组”的深度沉默。
Proc Natl Acad Sci U S A. 2024 Nov 5;121(45):e2313581121. doi: 10.1073/pnas.2313581121. Epub 2024 Oct 28.
6
TE-Seq: A Transposable Element Annotation and RNA-Seq Pipeline.TE-Seq：一种转座元件注释与RNA测序流程
bioRxiv. 2025 Feb 8:2024.10.11.617912. doi: 10.1101/2024.10.11.617912.
7
Genomic Multicopy Loci Targeted by Current Forensic Quantitative PCR Assays.当前法医定量 PCR 检测法靶向的基因组多拷贝基因座。
Genes (Basel). 2024 Oct 5;15(10):1299. doi: 10.3390/genes15101299.
8
p53motifDB: integration of genomic information and tumor suppressor p53 binding motifs.p53 基序数据库：基因组信息与肿瘤抑制因子 p53 结合基序的整合
bioRxiv. 2024 Sep 25:2024.09.24.614594. doi: 10.1101/2024.09.24.614594.
9
Retroviral Insertion Polymorphism (RIP) of Porcine Endogenous Retroviruses (PERVs) in Pig Genomes.猪基因组中猪内源性逆转录病毒（PERVs）的逆转录病毒插入多态性（RIP）
Animals (Basel). 2024 Feb 15;14(4):621. doi: 10.3390/ani14040621.
10
Applications of advanced technologies for detecting genomic structural variation.先进技术在检测基因组结构变异中的应用。
Mutat Res Rev Mutat Res. 2023 Jul-Dec;792:108475. doi: 10.1016/j.mrrev.2023.108475. Epub 2023 Nov 4.
本文引用的文献
1
Estimating the phylogeny and divergence times of primates using a supermatrix approach.使用超级矩阵方法估计灵长类动物的系统发育和分化时间。
BMC Evol Biol. 2009 Oct 27;9:259. doi: 10.1186/1471-2148-9-259.
2
The impact of retrotransposons on human genome evolution.逆转录转座子对人类基因组进化的影响。
Nat Rev Genet. 2009 Oct;10(10):691-703. doi: 10.1038/nrg2640.
3
Phylogeny of the macaques (Cercopithecidae: Macaca) based on Alu elements.基于Alu元件的猕猴（猕猴科：猕猴属）系统发育
Gene. 2009 Dec 15;448(2):242-9. doi: 10.1016/j.gene.2009.05.013. Epub 2009 Jun 2.
4
Mobile elements create structural variation: analysis of a complete human genome.移动元件产生结构变异：对完整人类基因组的分析
Genome Res. 2009 Sep;19(9):1516-26. doi: 10.1101/gr.091827.109. Epub 2009 May 13.
5
Comparative analysis of Alu repeats in primate genomes.灵长类基因组中Alu重复序列的比较分析。
Genome Res. 2009 May;19(5):876-85. doi: 10.1101/gr.083972.108.
6
Diverse cis factors controlling Alu retrotransposition: what causes Alu elements to die?控制Alu逆转录转座的多种顺式作用因子：是什么导致Alu元件失活？
Genome Res. 2009 Apr;19(4):545-55. doi: 10.1101/gr.089789.108. Epub 2009 Mar 9.
7
Retropositional events consolidate the branching order among New World monkey genera.反转录转座事件巩固了新大陆猴属之间的分支顺序。
Mol Phylogenet Evol. 2009 Mar;50(3):507-13. doi: 10.1016/j.ympev.2008.12.014. Epub 2008 Dec 25.
8
L1 recombination-associated deletions generate human genomic variation.L1重组相关缺失产生人类基因组变异。
Proc Natl Acad Sci U S A. 2008 Dec 9;105(49):19366-71. doi: 10.1073/pnas.0807866105. Epub 2008 Nov 26.
9
An alternative pathway for Alu retrotransposition suggests a role in DNA double-strand break repair.Alu逆转录转座的另一条途径表明其在DNA双链断裂修复中发挥作用。
Genomics. 2009 Mar;93(3):205-12. doi: 10.1016/j.ygeno.2008.09.016. Epub 2008 Nov 11.
10
Retrotransposons revisited: the restraint and rehabilitation of parasites.逆转录转座子再探讨：寄生虫的抑制与修复
Cell. 2008 Oct 3;135(1):23-35. doi: 10.1016/j.cell.2008.09.022.
Zotero 插件