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来自波罗的海冰中的嗜冷噬菌体具有多样的基因组和病毒-宿主相互作用。

Cold-active bacteriophages from the Baltic Sea ice have diverse genomes and virus-host interactions.

作者信息

Senčilo Ana, Luhtanen Anne-Mari, Saarijärvi Mikko, Bamford Dennis H, Roine Elina

机构信息

Department of Biosciences, University of Helsinki, P.O. Box 56, Viikinkaari 5, Helsinki, FI-00014, Finland.

Institute of Biotechnology, University of Helsinki, P.O. Box 56, Viikinkaari 5, Helsinki, FI-00014, Finland.

出版信息

Environ Microbiol. 2015 Oct;17(10):3628-41. doi: 10.1111/1462-2920.12611. Epub 2014 Oct 20.

Abstract

Heterotrophic bacteria are the major prokaryotic component of the Baltic Sea ice microbiome, and it is postulated that phages are among their major parasites. In this study, we sequenced the complete genomes of six earlier reported phage isolates from the Baltic Sea ice infecting Shewanella sp. and Flavobacterium sp. hosts as well as characterized the phage-host interactions. Based on the genome sequences, the six phages were classified into five new genera. Only two phages, 1/4 and 1/40, both infecting Shewanella sp. strains, showed significant nucleotide sequence similarity to each other and could be grouped into the same genus. These two phages are also related to Vibrio-specific phages sharing approximately 25% of the predicted gene products. Nevertheless, cross-titrations showed that the cold-active phages studied are host specific: none of the seven additionally tested, closely related Shewanella strains served as hosts for the phages. Adsorption experiments of two Shewanella phages, 1/4 and 3/49, conducted at 4 °C and at 15 °C revealed relatively fast adsorption rates that are, for example, comparable with those of phages infective in mesophilic conditions. Despite the small number of Shewanella phages characterized here, we could already find different types of phage-host interactions including a putative abortive infection.

摘要

异养细菌是波罗的海海冰微生物群落的主要原核生物组成部分,据推测噬菌体是它们的主要寄生生物之一。在本研究中,我们对之前报道的六种来自波罗的海海冰、感染希瓦氏菌属和黄杆菌属宿主的噬菌体分离株的全基因组进行了测序,并对噬菌体 - 宿主相互作用进行了表征。基于基因组序列,这六种噬菌体被分类为五个新属。只有两种噬菌体,即1/4和1/40,均感染希瓦氏菌属菌株,它们彼此显示出显著的核苷酸序列相似性,可归为同一属。这两种噬菌体还与弧菌特异性噬菌体相关,共享约25%的预测基因产物。然而,交叉滴定表明,所研究的冷活性噬菌体具有宿主特异性:另外测试的七种密切相关的希瓦氏菌菌株均未作为这些噬菌体的宿主。在4°C和15°C下对两种希瓦氏菌噬菌体1/4和3/49进行的吸附实验显示,其吸附速率相对较快,例如,与在嗜温条件下具有感染性的噬菌体相当。尽管此处表征的希瓦氏菌噬菌体数量较少,但我们已经发现了不同类型的噬菌体 - 宿主相互作用,包括一种推定的流产感染。

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